Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MTP21_RS06505 Genome accession   NZ_CP094880
Coordinates   1430096..1431517 (-) Length   473 a.a.
NCBI ID   WP_065302254.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1425096..1436517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS06480 - 1425701..1426351 (+) 651 WP_243976801.1 thiopurine S-methyltransferase -
  MTP21_RS06485 purT 1426445..1427620 (-) 1176 WP_243976810.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  MTP21_RS06490 cdd 1427768..1428655 (-) 888 WP_243976814.1 cytidine deaminase -
  MTP21_RS06495 - 1428984..1429661 (-) 678 WP_014231625.1 LrgB family protein -
  MTP21_RS06500 - 1429663..1430037 (-) 375 WP_243976815.1 CidA/LrgA family protein -
  MTP21_RS06505 sbcB 1430096..1431517 (-) 1422 WP_065302254.1 exodeoxyribonuclease I Machinery gene
  MTP21_RS06510 - 1431605..1431907 (+) 303 WP_243976817.1 hypothetical protein -
  MTP21_RS06515 - 1432061..1432648 (+) 588 WP_243976819.1 hypothetical protein -
  MTP21_RS06520 - 1432750..1433649 (+) 900 WP_243976821.1 hypothetical protein -
  MTP21_RS06525 - 1433758..1434561 (+) 804 WP_243976823.1 HNH endonuclease -
  MTP21_RS06530 - 1434916..1435368 (+) 453 WP_243976833.1 hypothetical protein -
  MTP21_RS06535 - 1435589..1436317 (+) 729 WP_243976835.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54453.61 Da        Isoelectric Point: 4.8188

>NTDB_id=673883 MTP21_RS06505 WP_065302254.1 1430096..1431517(-) (sbcB) [Vibrio natriegens strain WPAGA4]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKAVQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEEGFP
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLNNLALLRQHPEIREKLISLFSVERTFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIALLKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=673883 MTP21_RS06505 WP_065302254.1 1430096..1431517(-) (sbcB) [Vibrio natriegens strain WPAGA4]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAAACTTGGGGAACAAACCCTGCAAAAGATCGTCCGAG
TCAATTCGCTGGTGTTCGCACAGATGAAAATTTCAATATCATCGGCGAGCCTTTAGTTATGTATTGCCAGCCACCTGCTG
ATTACCTTCCTTCTCCTGAAGCTGCTTTAATTACTGGGATTACCCCACAAAAGGCAGTGCAGGAAGGTCTGCCTGAGCCT
GAATTTATTGCTAAAATTCATGCCGAGTTATCCAAACCCAATACCACCAGTTTGGGTTACAACAGTATTCGTTTTGATGA
TGAAGTGACGCGTTACACCTGTTACCGCAACTTTATTGACCCATATGCGTGGAGTTGGCAGAACGGCAATTCGCGCTGGG
ATTTACTTGATGTGCTGCGCGCTTGTCATGCCCTTCGACCAGAAGGCGTTGAATGGCCAGAAAATGAAGAAGGCTTTCCT
AGCTTCAAACTTGAGCATTTGTCTGTTGCCAACGGTATTGAACACAGCAATGCACACGATGCCATGGCTGACGTTATCGC
AACGATCGAGATGGCGAAGAAAGTTAAAGCCGCTCAGCCTAAGTTGTTCGATTACTTCTTCTCCATGCGTCAAAAGCGTA
AGCTGAATGAATTGGTTGATATCGTTAATATGACGCCTCTGATGCACGTTTCTGGCATGTTAGGACGCGAGTGTCAGTAC
ACAAGCTGGATTGTGCCTGTTGCATGGCATCCGACGAACAACAACGCGGTTATCACGATTGATTTAGCCAAAGATCCGCA
ACCTATCCTAGAGCTGTCTGCGGAAGAGCTGCACGAAAGGTTGTACACCAAGCGAGAAGATCTCGGTGATTTGCTGCCTG
TGCCAGTTAAACTTGTTCACTTGAATAAGTGCCCTATTCTGGCACCAGCGAAAACACTGACGGCTGAAAACGCGGAGTCT
ATCGGCATTGACCGTCAACAATGCTTGAACAATCTGGCTCTGTTGCGTCAGCACCCAGAGATTCGAGAAAAGCTGATCAG
CCTGTTTTCTGTTGAGCGCACATTTGAAAAAAGTGATGATGTGGATACTCAACTGTACGATGGCTTTTTCTCTCCGGCGG
ATCGCGCAGCGATGGATATTATTCGCGAGACCGACCCGAATAATCTGGCCGCTCTGGATATTGAGTTCGATGACAAGCGG
ATTAAACCACTGTTGTTCCGTTACCGTGCTCGAAACTTCCCTGGTACGCTAGACGAACAGGAACAAAGACGTTGGGCACA
GCACTGCCGTGAAGTGTTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATAGCACTATTAAAATCCGTTTATCGTTACGTAGAGAGCCTAGCCTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797