Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MTP21_RS01245 Genome accession   NZ_CP094880
Coordinates   275773..276780 (-) Length   335 a.a.
NCBI ID   WP_014230660.1    Uniprot ID   -
Organism   Vibrio natriegens strain WPAGA4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 270773..281780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS01215 zapB 270899..271141 (+) 243 WP_014230654.1 cell division protein ZapB -
  MTP21_RS01220 rraA 271215..271757 (-) 543 WP_014230655.1 ribonuclease E activity regulator RraA -
  MTP21_RS01225 - 271834..272751 (-) 918 WP_014230656.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  MTP21_RS01230 hslU 273005..274336 (-) 1332 WP_014230657.1 HslU--HslV peptidase ATPase subunit -
  MTP21_RS01235 hslV 274360..274911 (-) 552 WP_014230658.1 ATP-dependent protease subunit HslV -
  MTP21_RS01240 - 275066..275611 (-) 546 WP_014230659.1 SPOR domain-containing protein -
  MTP21_RS01245 cytR 275773..276780 (-) 1008 WP_014230660.1 DNA-binding transcriptional regulator CytR Regulator
  MTP21_RS01250 priA 277116..279320 (-) 2205 WP_243975840.1 primosomal protein N' -
  MTP21_RS01255 rpmE 279618..279839 (+) 222 WP_014230662.1 50S ribosomal protein L31 -
  MTP21_RS01260 rpsJ 280298..280609 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  MTP21_RS01265 rplC 280624..281253 (+) 630 WP_014230663.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36842.30 Da        Isoelectric Point: 6.2447

>NTDB_id=673873 MTP21_RS01245 WP_014230660.1 275773..276780(-) (cytR) [Vibrio natriegens strain WPAGA4]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=673873 MTP21_RS01245 WP_014230660.1 275773..276780(-) (cytR) [Vibrio natriegens strain WPAGA4]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAACCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAGTCGAAGACGATTGTTACGATCGTTCCTGACATCTGCGATCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCGATGGAGCACGGCTATCTGGTTTTACTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACCTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTGAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTGGAACTGCCAACCGTCCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCGTTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGTGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCA
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTCGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACTATCTCTCAGCCTCGATACG
AGATTGGCCGACAGGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTACGCGGAAGTGCGGCGCCTCCTCAGCGAGCGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.612

100

0.976
  cytR Vibrio cholerae C6706

89.222

99.701

0.89