Detailed information    

insolico Bioinformatically predicted

Overview


Name   radA   Type   Machinery gene
Locus tag   MUG64_RS10910 Genome accession   NZ_CP094865
Coordinates   2301961..2303334 (-) Length   457 a.a.
NCBI ID   WP_002438664.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain C100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2296961..2308334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG64_RS10895 (MUG64_10895) cysE 2297971..2298600 (-) 630 WP_002438669.1 serine O-acetyltransferase -
  MUG64_RS10900 (MUG64_10900) gltX 2298985..2300439 (-) 1455 WP_002438667.1 glutamate--tRNA ligase -
  MUG64_RS10905 (MUG64_10905) - 2300849..2301907 (-) 1059 WP_002489368.1 PIN/TRAM domain-containing protein -
  MUG64_RS10910 (MUG64_10910) radA 2301961..2303334 (-) 1374 WP_002438664.1 DNA repair protein RadA Machinery gene
  MUG64_RS10915 (MUG64_10915) - 2303825..2306278 (-) 2454 WP_237632662.1 ATP-dependent Clp protease ATP-binding subunit -
  MUG64_RS10920 (MUG64_10920) - 2306292..2307299 (-) 1008 WP_002438663.1 protein arginine kinase -
  MUG64_RS10925 (MUG64_10925) - 2307289..2307852 (-) 564 WP_002469112.1 UvrB/UvrC motif-containing protein -
  MUG64_RS10930 (MUG64_10930) - 2307873..2308334 (-) 462 WP_001832288.1 CtsR family transcriptional regulator -

Sequence


Protein


Download         Length: 457 a.a.        Molecular weight: 50273.86 Da        Isoelectric Point: 7.5278

>NTDB_id=673807 MUG64_RS10910 WP_002438664.1 2301961..2303334(-) (radA) [Staphylococcus epidermidis strain C100]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLNSVKHEATPRLLTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLYITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVK
EERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRAIIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=673807 MUG64_RS10910 WP_002438664.1 2301961..2303334(-) (radA) [Staphylococcus epidermidis strain C100]
ATGGCCAAGAAAAAAGTAATATTCGAATGTATGGCATGTGGCTATCAATCTCCTAAGTGGATGGGCAAGTGCCCTAACTG
CGGTGCGTGGAATCAAATGGAAGAAATAGTAGAAAAGGTTGCTCATCCTAAACATGGTGTAAAAACAAAAGAAACAGCAG
GTAAGGTACAAAAGTTAAATAGTGTTAAGCATGAAGCTACCCCTAGATTACTTACAGAATCAAAGGAATTTAACCGTGTT
TTAGGTGGAGGTATTGTAAGTGGTTCGTTAGTACTAATAGGTGGAGACCCAGGTATTGGTAAGTCGACTTTATTGCTACA
AATTTGTGCTGCGCTGTCACAAAATAAGAATGTTTTATATATTACTGGTGAGGAATCTATTAATCAAACTAAGTTGCGCG
CTGATCGTTTAGAAGAAGATTCTAGTCATCTTAATGTTTTAGCTGAAACTGATTTAGAAGTGATACATCAAACTGTAAAA
GAAGAGAGACCTGACTTACTTGTTGTTGATTCGATTCAAACAATCTATCATCCGGAAATTAGTTCCGCACCTGGATCGGT
ATCACAAGTAAGAGAGAGTACGCAGAGTTTAATGAACATTGCTAAACAAATGAATATTGCCACATTTATTGTGGGACACG
TAACAAAAGAAGGACAAATCGCCGGACCAAGATTATTGGAACATATGGTTGATACAGTTCTTTATTTTGAAGGAGATGAG
CATCACGCATATCGTATCCTTAGAGCAGTAAAAAATAGATTTGGTTCTACAAATGAGATGGGGATTTTCGAAATGAAGCA
AAGTGGATTAAAAGGCGTACTTAATCCTTCTGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCGGGCTCTACAATCG
TCCCCACTATGGAAGGAACAAGACCACTACTCATTGAAGTCCAAGCGCTTGTTACACCAACAACATTTAATAATCCTAGA
CGAATGGCTACAGGTATAGATCATAATCGATTAAGTTTACTTATGGCGGTTCTAGAAAAAAAGGAAAACTATTTACTCCA
ACAACAAGATGCCTATATTAAAGTAGCAGGTGGCGTCAAATTAACAGAACCTGCTGTTGATTTAAGCATTATTGTTGCGA
CAGCTTCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTGTGGGTGAAGTTGGATTAACAGGTGAAGTACGC
AGAGTATCTCGCATAGAGCAACGTGTTCAAGAAGCGGCCAAACTAGGGTTTAAAAGAGCTATTATTCCACAGACAAATAT
TGGAGGTTGGACATTCCCAGAAGGCATCCAAGTCGTTGGTGTTTCATCAGTACATGAAGCTTTGAAATATGCATTACATT
CAAAACAGCGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

99.781

0.659

  radA Streptococcus pneumoniae Rx1

60.802

98.249

0.597

  radA Streptococcus pneumoniae D39

60.802

98.249

0.597

  radA Streptococcus pneumoniae R6

60.802

98.249

0.597

  radA Streptococcus pneumoniae TIGR4

60.802

98.249

0.597

  radA Streptococcus mitis NCTC 12261

60.802

98.249

0.597

  radA Streptococcus mitis SK321

60.802

98.249

0.597