Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB06_RS00965 Genome accession   NZ_CP109312
Coordinates   206664..207347 (-) Length   227 a.a.
NCBI ID   WP_406490608.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01604     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 201664..212347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB06_RS00930 (OHB06_00920) - 201822..202451 (-) 630 WP_406490597.1 hypothetical protein -
  OHB06_RS00935 (OHB06_00925) - 202456..203148 (-) 693 WP_406490599.1 sigma-70 family RNA polymerase sigma factor -
  OHB06_RS00940 (OHB06_00930) - 203153..203341 (-) 189 WP_406490601.1 hypothetical protein -
  OHB06_RS00945 (OHB06_00935) - 203573..203869 (-) 297 WP_406490602.1 hypothetical protein -
  OHB06_RS00950 (OHB06_00940) - 204137..205063 (+) 927 WP_406490604.1 hypothetical protein -
  OHB06_RS00955 (OHB06_00945) - 205259..205504 (+) 246 WP_406498756.1 DUF6207 family protein -
  OHB06_RS00960 (OHB06_00950) - 205579..206508 (+) 930 WP_406490606.1 Ku protein -
  OHB06_RS00965 (OHB06_00955) dinR/lexA 206664..207347 (-) 684 WP_406490608.1 transcriptional repressor LexA Regulator
  OHB06_RS00970 (OHB06_00960) - 207478..208326 (-) 849 WP_406490610.1 ATP-binding protein -
  OHB06_RS00975 (OHB06_00965) - 208413..208700 (-) 288 WP_406490612.1 hypothetical protein -
  OHB06_RS00980 (OHB06_00970) - 208832..209605 (+) 774 WP_406490614.1 GntR family transcriptional regulator -
  OHB06_RS00985 (OHB06_00975) - 210061..210384 (+) 324 WP_406490616.1 HIT family protein -
  OHB06_RS00990 (OHB06_00980) - 210388..211485 (-) 1098 WP_406490618.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24586.14 Da        Isoelectric Point: 6.4929

>NTDB_id=673797 OHB06_RS00965 WP_406490608.1 206664..207347(-) (dinR/lexA) [Streptomyces sp. NBC_01604]
MPGWTTARQHAGAVPRAPGPPRGSQLTNRQSAIVRYITESVARQGYPPSMREIAKAVGLVSTSSVAHQLMALERKGVLYR
DPHRPRAYQVRPSWAPDLGTRGEAPVDVPLVGRIAAGAPLLAEELVEDVYSLPRQVVGDGDLFALTVSGDSMVDASICDG
DIVIVRRMDSADHGDIVAALLEDEATVKVLRRQDGEVWLMPRNPDYQPIPGDQAQILGKVVSVLRML

Nucleotide


Download         Length: 684 bp        

>NTDB_id=673797 OHB06_RS00965 WP_406490608.1 206664..207347(-) (dinR/lexA) [Streptomyces sp. NBC_01604]
GTGCCGGGATGGACAACAGCGCGCCAGCACGCCGGGGCCGTCCCCCGGGCCCCCGGACCGCCGAGGGGCAGCCAGCTGAC
GAACCGCCAGTCGGCCATCGTCCGCTACATCACGGAGTCGGTCGCGCGACAGGGCTACCCGCCGTCGATGCGCGAGATCG
CAAAGGCCGTGGGCCTCGTCAGCACGTCCTCGGTCGCCCACCAGCTGATGGCCCTGGAGCGCAAAGGCGTCCTCTACCGT
GACCCGCACCGTCCACGCGCCTACCAGGTACGGCCCTCCTGGGCACCCGACCTCGGCACCAGAGGCGAAGCACCGGTAGA
CGTCCCGCTCGTCGGACGCATCGCTGCTGGCGCACCCCTGCTCGCCGAGGAACTGGTCGAGGACGTCTACTCCCTGCCCC
GCCAAGTCGTCGGCGACGGCGACCTGTTCGCCCTGACGGTCTCCGGCGACAGCATGGTCGACGCGTCGATCTGCGACGGC
GACATCGTCATCGTCCGCCGCATGGACAGCGCCGACCACGGCGACATCGTCGCCGCACTCCTGGAGGACGAAGCAACCGT
CAAAGTACTGCGCCGGCAGGACGGCGAGGTGTGGCTCATGCCCCGCAACCCCGACTACCAGCCGATCCCCGGCGACCAGG
CACAGATCCTCGGCAAGGTCGTCAGCGTGCTCCGCATGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(24-87)

Peptidase S24-like (Peptidase_S24)

(109-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.718

90.749

0.388