Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BTUAT1_RS06575 Genome accession   NZ_AP014928
Coordinates   1307865..1309970 (-) Length   701 a.a.
NCBI ID   WP_060832280.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TUAT1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302865..1314970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTUAT1_RS06550 (BTUAT1_12680) - 1303106..1303348 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BTUAT1_RS06555 (BTUAT1_12690) - 1303401..1304900 (-) 1500 WP_035392257.1 ATP-binding protein -
  BTUAT1_RS06560 (BTUAT1_12700) - 1305105..1305560 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTUAT1_RS06565 (BTUAT1_12710) motB 1305747..1306514 (-) 768 WP_019743067.1 flagellar motor protein MotB -
  BTUAT1_RS06570 (BTUAT1_12720) motA 1306507..1307301 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  BTUAT1_RS06575 (BTUAT1_12730) clpC 1307865..1309970 (-) 2106 WP_060832280.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BTUAT1_RS06580 (BTUAT1_12740) - 1310216..1311259 (+) 1044 WP_060832281.1 hypothetical protein -
  BTUAT1_RS06585 (BTUAT1_12750) queC 1311534..1312190 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  BTUAT1_RS06590 (BTUAT1_12760) queD 1312191..1312631 (+) 441 WP_046527711.1 6-carboxytetrahydropterin synthase QueD -
  BTUAT1_RS06595 (BTUAT1_12770) queE 1312624..1313355 (+) 732 WP_024719652.1 7-carboxy-7-deazaguanine synthase QueE -
  BTUAT1_RS06600 (BTUAT1_12780) queF 1313371..1313868 (+) 498 WP_003211403.1 preQ(1) synthase -
  BTUAT1_RS06605 (BTUAT1_12790) - 1314127..1314345 (+) 219 WP_017367128.1 hypothetical protein -
  BTUAT1_RS06610 (BTUAT1_12800) - 1314445..1314969 (-) 525 WP_041092383.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78179.68 Da        Isoelectric Point: 5.0836

>NTDB_id=67378 BTUAT1_RS06575 WP_060832280.1 1307865..1309970(-) (clpC) [Bacillus altitudinis strain TUAT1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKISNGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDDAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDEEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=67378 BTUAT1_RS06575 WP_060832280.1 1307865..1309970(-) (clpC) [Bacillus altitudinis strain TUAT1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCAC
TAAAAATTTCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCCGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACGACATTAAAGGAATATCGTCAAATTGAAAAAGATGCTGCCCTT
GAACGCAGGTTCCAGCCTGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATCTTAAAAGGAATTCAGGATAA
GTATGAAGCCTATCATGGCGTCACCTATTCTGACGATGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGACTTGCGCAAATTGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACGAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGTGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAATACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATTGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGACACAGTCATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGCCCGTTACGAAGAACGATTCA
AGAGCATGTTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.834

100

0.599
  clpE Streptococcus mutans UA159

56.242

100

0.598
  clpE Streptococcus pneumoniae Rx1

55.846

100

0.579
  clpE Streptococcus pneumoniae D39

55.846

100

0.579
  clpE Streptococcus pneumoniae R6

55.846

100

0.579
  clpE Streptococcus pneumoniae TIGR4

55.846

100

0.579
  clpC Bacillus subtilis subsp. subtilis str. 168

53.949

95.72

0.516
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.698

90.728

0.424
  clpC Streptococcus thermophilus LMD-9

44.118

92.154

0.407
  clpC Streptococcus thermophilus LMG 18311

43.963

92.154

0.405
  clpC Streptococcus pneumoniae TIGR4

44.164

90.442

0.399
  clpC Streptococcus pneumoniae Rx1

44.356

89.729

0.398
  clpC Streptococcus pneumoniae D39

44.356

89.729

0.398
  clpC Streptococcus mutans UA159

44.127

89.872

0.397

Multiple sequence alignment