Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUB20_RS07730 Genome accession   NZ_CP094859
Coordinates   1649890..1650762 (-) Length   290 a.a.
NCBI ID   WP_070857976.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain C99     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1644890..1655762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB20_RS07715 (MUB20_07715) xerC 1645191..1646081 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  MUB20_RS07720 (MUB20_07720) trmFO 1646306..1647613 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUB20_RS07725 (MUB20_07725) topA 1647638..1649707 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  MUB20_RS07730 (MUB20_07730) dprA 1649890..1650762 (-) 873 WP_070857976.1 DNA-processing protein DprA Machinery gene
  MUB20_RS07735 (MUB20_07735) - 1651103..1651318 (-) 216 Protein_1501 transposase -
  MUB20_RS07740 (MUB20_07740) sucD 1651568..1652476 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  MUB20_RS07745 (MUB20_07745) sucC 1652498..1653664 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  MUB20_RS07750 (MUB20_07750) - 1653772..1654542 (-) 771 WP_001829514.1 ribonuclease HII -
  MUB20_RS07755 (MUB20_07755) ylqF 1654547..1655410 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33728.63 Da        Isoelectric Point: 9.3618

>NTDB_id=673769 MUB20_RS07730 WP_070857976.1 1649890..1650762(-) (dprA) [Staphylococcus epidermidis strain C99]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKDMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFLSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=673769 MUB20_RS07730 WP_070857976.1 1649890..1650762(-) (dprA) [Staphylococcus epidermidis strain C99]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGATATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCTTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.597

99.31

0.562
  dprA Staphylococcus aureus N315

56.597

99.31

0.562