Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB14_RS41755 Genome accession   NZ_CP109303
Coordinates   9080940..9082871 (-) Length   643 a.a.
NCBI ID   WP_405873110.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01613     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 9075940..9087871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB14_RS41740 (OHB14_41710) - 9077799..9078818 (-) 1020 WP_405873105.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OHB14_RS41745 (OHB14_41715) - 9078815..9079480 (-) 666 WP_406445632.1 hypothetical protein -
  OHB14_RS41750 (OHB14_41720) - 9079582..9080883 (+) 1302 WP_405873108.1 RNA polymerase sigma factor -
  OHB14_RS41755 (OHB14_41725) rcrQ 9080940..9082871 (-) 1932 WP_405873110.1 ABC transporter ATP-binding protein Regulator
  OHB14_RS41760 (OHB14_41730) rcrP 9082871..9084604 (-) 1734 WP_406445635.1 ABC transporter ATP-binding protein Regulator
  OHB14_RS41765 (OHB14_41735) - 9084720..9086174 (-) 1455 WP_405873113.1 FGGY family carbohydrate kinase -
  OHB14_RS41770 (OHB14_41740) - 9086349..9086654 (-) 306 WP_405873114.1 YtxH domain-containing protein -
  OHB14_RS41790 (OHB14_41760) - 9087433..9087711 (-) 279 WP_405873115.1 Atu4866 domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69860.39 Da        Isoelectric Point: 5.7625

>NTDB_id=673768 OHB14_RS41755 WP_405873110.1 9080940..9082871(-) (rcrQ) [Streptomyces sp. NBC_01613]
MAGPMARMMGQGGGPDSRSMDFKVSGKRLIAQFKPERLTIYGLLFCVVVSVGLNVVGPKILGEATDLVFAGIIGRQMPSG
ATKEQVLASMRARGEGQVADMLRSTDFTPGKGIDFDAVGHVLLLALCTFLVAGLLMAVATRMVNRAVNRTMFRMREDVQT
KMSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRIG
KRSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAKQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNLNYVLV
AVVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPLRGAKPEELRGRVEL
ESISFRYDPEKPLIENLSLKAEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIGTMSRDELRAGIGMVLQD
TWLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLD
EATSSVDTRTEVLIQKAMAKLADGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHADLLAADGAYARLYKAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=673768 OHB14_RS41755 WP_405873110.1 9080940..9082871(-) (rcrQ) [Streptomyces sp. NBC_01613]
ATGGCCGGGCCGATGGCACGGATGATGGGCCAGGGCGGCGGTCCCGACAGCCGTTCGATGGATTTCAAGGTGTCGGGCAA
ACGCCTGATCGCCCAGTTCAAGCCGGAACGTCTCACGATCTACGGGCTGCTGTTCTGCGTGGTCGTGAGCGTCGGCCTGA
ACGTGGTCGGGCCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCCGGCATCATCGGGCGGCAGATGCCGTCCGGG
GCGACGAAGGAGCAGGTCCTCGCGTCCATGCGGGCGCGCGGCGAGGGTCAGGTCGCCGACATGCTCCGCAGCACCGACTT
CACGCCGGGCAAGGGCATCGACTTCGACGCGGTGGGCCACGTACTGCTGCTCGCGCTGTGTACGTTCCTCGTCGCCGGTC
TGCTGATGGCGGTGGCGACGCGGATGGTGAACCGGGCCGTCAACCGGACCATGTTCCGGATGCGCGAGGACGTGCAGACG
AAAATGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGGGCGACCAACGACATCGA
CAACATCGGGCAGACGCTGCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACGATCATCGGTGTGCTGGCGATGA
TGTTCTGGGTGTCGTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACGCGCATCGGC
AAGCGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCCACCGGCAAGCTGAACGCCCACGTCGAGGAGATGTACACCGG
CCACACGCTGGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCCAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGG
CGGGGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTG
GCGGTCGTGGGCGGCCTACGGGTCGCGTCCGGCTCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCA
GTTCTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCG
AACTCCTGGACGCGGAGGAGCAGGAGGCGGATCCGCTGCGCGGCGCGAAGCCCGAGGAGCTGCGGGGGCGGGTGGAGCTG
GAGAGCATCTCCTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGAACCTGTCCCTGAAGGCCGAACCCGGGCACACCGT
CGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAACCTGCTCATGCGGTTCTACGAGGTCTCCGGCGGGC
GGATCACCCTCGACGGCGTCGACATCGGGACGATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTGCAGGAC
ACCTGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGACGTCACGCGGGGCGAGATCGAGGA
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGCACCCTTCCGGACGGCTACGACACCGTGATCGACGACGAGGGCA
CGGGCGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCGGATCCGACGATCCTGGTGCTCGAC
GAGGCGACGAGTTCCGTCGACACCCGTACGGAGGTCCTGATCCAGAAGGCGATGGCCAAACTGGCGGACGGGCGTACGTC
GTTCGTGATCGCGCACCGGCTGTCGACCATCCGGGACGCGGACACGATCCTGGTCATGGAGAACGGGTCGATCGTCGAAC
AGGGCACGCATGCGGACCTGTTGGCGGCCGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCTCAGGCGGTCGCC
GAAGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(44-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.357

96.267

0.398