Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHB14_RS37000 Genome accession   NZ_CP109303
Coordinates   8009851..8010849 (+) Length   332 a.a.
NCBI ID   WP_405871907.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01613     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 8004851..8015849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB14_RS36975 (OHB14_36955) - 8005175..8005819 (+) 645 WP_405877522.1 TetR/AcrR family transcriptional regulator -
  OHB14_RS36980 (OHB14_36960) - 8006004..8007545 (+) 1542 WP_405871901.1 MFS transporter -
  OHB14_RS36985 (OHB14_36965) - 8007653..8008180 (-) 528 WP_405871902.1 MarR family winged helix-turn-helix transcriptional regulator -
  OHB14_RS36990 (OHB14_36970) - 8008279..8009070 (+) 792 WP_405871903.1 dioxygenase -
  OHB14_RS36995 (OHB14_36975) - 8009129..8009647 (-) 519 WP_405871905.1 GNAT family N-acetyltransferase -
  OHB14_RS37000 (OHB14_36980) rpoS 8009851..8010849 (+) 999 WP_405871907.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OHB14_RS37005 (OHB14_36985) - 8011278..8012078 (+) 801 WP_406444639.1 TetR/AcrR family transcriptional regulator -
  OHB14_RS37010 (OHB14_36990) - 8012109..8013074 (-) 966 WP_405871908.1 helix-turn-helix transcriptional regulator -
  OHB14_RS37015 (OHB14_36995) - 8013171..8014703 (+) 1533 WP_405871909.1 MFS transporter -
  OHB14_RS37020 (OHB14_37000) - 8014985..8015746 (+) 762 WP_406444641.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37123.85 Da        Isoelectric Point: 5.0565

>NTDB_id=673758 OHB14_RS37000 WP_405871907.1 8009851..8010849(+) (rpoS) [Streptomyces sp. NBC_01613]
MATRAVARRKSASGETADRASSVRARAGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLEGDEESKAE
ASREELEALVADGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELGSNADRVVDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDHLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=673758 OHB14_RS37000 WP_405871907.1 8009851..8010849(+) (rpoS) [Streptomyces sp. NBC_01613]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCTGGCGAGACGGCCGACAGGGCAAGCAGTGTTCGCGCCCGCGC
CGGCGAGATCGCCGACCGTGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTGGAGGGGGACGAGGAGTCCAAGGCCGAG
GCCTCCCGCGAGGAGCTCGAGGCCCTGGTGGCCGACGGCGAGCGGGCGAAGGACATCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCGCGGCGCTACCCCCGTAGCGGCCTCCCTCTCCTGGACCTGATCCAGGAGGGCAATGCCGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCGACATACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATAGCGGACCAGTCGCGCACCATCCGCCTGCCCGTGCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGTGACCCGGAGCCCGCGGAGATCGCCGCCGAGCTCGGTTCGAACGCCGACC
GCGTGGTCGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTCGAGGACACCTCGGCGGTCTCGCCCGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTCGACCA
CCTCATCGGCCGCCTCGACCCGCGCACGGCATCCATCATCAAGATGCGCTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACGGAGGTCGGCAAGGAGCACGGCCTGACGCGCGAGCGGATTCGGCAGATCGAGAAGCACGCGCTGCTCGAGCTGAAG
AAGCTGGCACGCGACACGGGCTTCGAGGCAGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.137

90.06

0.37