Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB14_RS23125 Genome accession   NZ_CP109303
Coordinates   5057999..5058778 (+) Length   259 a.a.
NCBI ID   WP_030947215.1    Uniprot ID   A0A9Q3VW39
Organism   Streptomyces sp. NBC_01613     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5052999..5063778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB14_RS23110 (OHB14_23075) - 5053177..5053710 (+) 534 WP_406441912.1 TerD family protein -
  OHB14_RS23115 (OHB14_23080) - 5053806..5056709 (-) 2904 WP_405868773.1 vitamin B12-dependent ribonucleotide reductase -
  OHB14_RS23120 (OHB14_23085) nrdR 5056873..5057433 (-) 561 WP_405868774.1 transcriptional regulator NrdR -
  OHB14_RS23125 (OHB14_23090) dinR/lexA 5057999..5058778 (+) 780 WP_030947215.1 transcriptional repressor LexA Regulator
  OHB14_RS23130 (OHB14_23095) - 5058946..5060976 (-) 2031 WP_406441914.1 ATP-dependent DNA helicase -
  OHB14_RS23135 (OHB14_23100) - 5061260..5062069 (-) 810 WP_405868779.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28003.74 Da        Isoelectric Point: 7.0668

>NTDB_id=673712 OHB14_RS23125 WP_030947215.1 5057999..5058778(+) (dinR/lexA) [Streptomyces sp. NBC_01613]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=673712 OHB14_RS23125 WP_030947215.1 5057999..5058778(+) (dinR/lexA) [Streptomyces sp. NBC_01613]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGTGAATCCCGAGGGGCACAAGCGCTCCCTACCGGGCCGACCTCCAGGCATCCGTGCGGACAGCTCGGGGCTCA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCGGTCGGCCTGTCCAGCACCTCCTCGGTCGCACACCAACTGATGGCACTGGAACGCAAGGGCTTCCTGCGCCG
AGACCCGCACCGTCCGCGCGCGTACGAGGTCCGCGGCTCCGACCAGGGCGCCTCCGTGCAGCCCACCGACACCGCCGGCA
AGCCCGCGGCATCCTACGTCCCGCTGGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGCCAACTGGTCGGTGACGGCGAACTGTTCGTACTGAAAGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACGGTGCGCCGCCAACCCGTCGCCGAGAACGGCGACATCGTCGCGGCGATGCTCG
AAGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCGGGCGACGACGCGACCATCCTCGGCAAGGTGGTGGCAGTGCTGCGGCGCGTTTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q3VW39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375