Detailed information NTG0673698

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OHB14_RS16095
• Genome accession: NZ_CP109303
• Coordinates: 3429625..3430650 (+)
• Length: 341 a.a.
• NCBI ID: WP_406440372.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01613
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3424625..3435650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHB14_RS16080 (OHB14_16060)	-	3426311..3427183 (-)	873	WP_405866202.1	carbohydrate ABC transporter permease	-
OHB14_RS16085 (OHB14_16065)	-	3427187..3428113 (-)	927	WP_405866204.1	carbohydrate ABC transporter permease	-
OHB14_RS16090 (OHB14_16070)	-	3428110..3429471 (-)	1362	WP_406440370.1	ABC transporter substrate-binding protein	-
OHB14_RS16095 (OHB14_16075)	cytR	3429625..3430650 (+)	1026	WP_406440372.1	LacI family DNA-binding transcriptional regulator	Regulator
OHB14_RS16100 (OHB14_16080)	-	3430700..3431509 (-)	810	WP_406440374.1	SAM-dependent methyltransferase	-
OHB14_RS16105 (OHB14_16085)	-	3431668..3431913 (-)	246	WP_406440376.1	DUF397 domain-containing protein	-
OHB14_RS16110 (OHB14_16090)	-	3431917..3432783 (-)	867	WP_406440378.1	helix-turn-helix domain-containing protein	-
OHB14_RS16115 (OHB14_16095)	-	3433185..3433607 (+)	423	WP_406440380.1	ATP-binding protein	-
OHB14_RS16120 (OHB14_16100)	-	3433604..3434248 (+)	645	WP_406440382.1	DUF6624 domain-containing protein	-
OHB14_RS16125 (OHB14_16105)	-	3434353..3434847 (+)	495	WP_406440384.1	peptidylprolyl isomerase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 36877.90 Da
• Isoelectric Point: 6.4333

>NTDB_id=673698 OHB14_RS16095 WP_406440372.1 3429625..3430650(+) (cytR) [Streptomyces sp. NBC_01613]
MAGATLRDVARRAGVSIRTVSNVVNASVPVSDELRTRVEAALEELDYRPNLVARNLRRGRTGMLAFVVPELDVPYFAELA
REVITAARAHGYVVMLDQTDGDRERERELLSRESRATMFDGLLLSPLSISEDELRGRTNRVPVVLLGEHIFNGHFHHVAI
DNVAAAREATEHLIALGRRRIAAIGDQPYSTGETAQLRTIGYRQALTAAGLPLDESLVVPTPRFHRHLGAEAMNHLLALP
EPPDAVFCYNDLLAIGAMHALTRAGVRVPEDIAVVGVDGIQEGEYSSPTLTTIAPDKARIAHTAVSTLVGIIAGTASPPA
DSKAPYRLVVRGSTTSDSRAE

Nucleotide

• Length: 1026 bp

>NTDB_id=673698 OHB14_RS16095 WP_406440372.1 3429625..3430650(+) (cytR) [Streptomyces sp. NBC_01613]
ATGGCCGGCGCAACCCTCCGTGACGTCGCCCGACGCGCGGGAGTCTCCATCCGCACGGTGTCCAATGTGGTCAATGCTTC
CGTGCCCGTCTCCGACGAGCTGCGGACCCGGGTCGAGGCGGCGCTGGAGGAACTCGACTACCGGCCCAACCTGGTCGCCC
GCAACCTTCGCCGGGGCCGCACCGGCATGCTCGCCTTCGTCGTGCCGGAACTCGACGTCCCGTATTTCGCCGAGCTGGCC
CGTGAGGTCATCACCGCGGCCCGTGCCCACGGATACGTCGTCATGCTCGACCAGACGGACGGCGACCGCGAGCGGGAACG
GGAGCTGCTCAGCCGCGAATCACGCGCCACGATGTTCGACGGACTGCTGCTGAGCCCCCTGTCCATCTCCGAGGACGAAC
TGCGCGGCCGCACCAACCGGGTGCCCGTCGTCCTGCTCGGCGAGCACATCTTCAACGGCCACTTCCACCACGTGGCGATA
GACAATGTCGCCGCGGCCCGCGAGGCCACCGAGCACCTCATCGCCCTGGGGCGCAGGCGTATCGCCGCCATCGGTGACCA
GCCCTACAGCACCGGCGAAACCGCCCAACTGCGCACCATCGGTTACCGCCAGGCCCTGACAGCGGCCGGCCTGCCGCTCG
ACGAGAGCCTCGTCGTGCCCACGCCCCGCTTCCACCGGCACCTCGGCGCCGAGGCCATGAACCATCTCCTCGCCCTGCCC
GAACCACCCGACGCCGTCTTCTGCTACAACGACCTCCTCGCCATCGGCGCGATGCACGCGCTGACGCGCGCGGGAGTCCG
CGTTCCCGAAGACATCGCCGTGGTCGGTGTCGACGGCATCCAGGAGGGCGAGTACAGCTCGCCGACACTCACCACCATCG
CGCCCGACAAGGCCCGCATCGCGCACACGGCCGTCAGCACGCTCGTCGGGATCATCGCCGGCACGGCATCGCCACCGGCA
GACTCGAAGGCGCCGTACCGGTTGGTGGTGAGGGGCAGCACCACGAGCGACTCTCGAGCCGAGTGA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (170-334)

• Bacterial regulatory proteins, lacI family (LacI) (5-50)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	38.123	100	0.381
cytR	Vibrio cholerae C6706	37.059	99.707	0.37