Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7R29_RS16405 Genome accession   NZ_AP022295
Coordinates   3413765..3414370 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain BEC1-S17-ESBL-07     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3408765..3419370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R29_RS16385 (BE1S17E07_31760) aes 3408906..3409865 (+) 960 WP_000801846.1 acetyl esterase -
  H7R29_RS16390 (BE1S17E07_31770) hemH 3409862..3410824 (-) 963 WP_001250088.1 ferrochelatase -
  H7R29_RS16395 (BE1S17E07_31780) adk 3410956..3411600 (-) 645 WP_001220233.1 adenylate kinase -
  H7R29_RS16400 (BE1S17E07_31790) htpG 3411781..3413655 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  H7R29_RS16405 (BE1S17E07_31800) recR 3413765..3414370 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7R29_RS16410 (BE1S17E07_31810) ybaB 3414370..3414699 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7R29_RS16415 (BE1S17E07_31820) dnaX 3414752..3416683 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  H7R29_RS16420 (BE1S17E07_31830) apt 3416812..3417363 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7R29_RS16425 (BE1S17E07_31840) ybaN 3417516..3417893 (-) 378 WP_001188905.1 DUF454 family protein -
  H7R29_RS16430 (BE1S17E07_31850) priC 3417963..3418490 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  H7R29_RS16435 (BE1S17E07_31860) rsmS 3418504..3418665 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=67367 H7R29_RS16405 WP_001195025.1 3413765..3414370(-) (recR) [Escherichia coli strain BEC1-S17-ESBL-07]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=67367 H7R29_RS16405 WP_001195025.1 3413765..3414370(-) (recR) [Escherichia coli strain BEC1-S17-ESBL-07]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment