Detailed information NTG0673574

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MT996_RS09650
• Genome accession: NZ_CP094846
• Coordinates: 1994471..1995826 (-)
• Length: 451 a.a.
• NCBI ID: WP_153828399.1
• Uniprot ID: -
• Organism: Ornithobacterium rhinotracheale strain K223
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1989471..2000826

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MT996_RS09620 (MT996_09620)	-	1989921..1990628 (-)	708	WP_185147513.1	SDR family oxidoreductase	-
MT996_RS09625 (MT996_09625)	-	1990803..1991540 (+)	738	WP_153828395.1	(Fe-S)-binding protein	-
MT996_RS09630 (MT996_09630)	-	1991554..1992936 (+)	1383	WP_153828396.1	lactate utilization protein B	-
MT996_RS09635 (MT996_09635)	-	1992983..1993339 (+)	357	WP_153828397.1	DUF1304 domain-containing protein	-
MT996_RS09640 (MT996_09640)	-	1993476..1993742 (+)	267	WP_185148095.1	hypothetical protein	-
MT996_RS09645 (MT996_09645)	-	1993819..1994412 (+)	594	WP_153828398.1	lactate utilization protein C	-
MT996_RS09650 (MT996_09650)	radA	1994471..1995826 (-)	1356	WP_153828399.1	DNA repair protein RadA	Machinery gene
MT996_RS09655 (MT996_09655)	-	1995831..1996292 (-)	462	WP_153828400.1	Rieske (2Fe-2S) protein	-
MT996_RS09660 (MT996_09660)	greA	1996390..1996875 (+)	486	WP_128501843.1	transcription elongation factor GreA	-
MT996_RS09665 (MT996_09665)	-	1996877..1997266 (+)	390	WP_153828401.1	HIT family protein	-
MT996_RS09670 (MT996_09670)	rfbD	1997341..1998198 (-)	858	WP_153828402.1	dTDP-4-dehydrorhamnose reductase	-
MT996_RS09680 (MT996_09680)	-	1998428..1999288 (-)	861	WP_153828403.1	rhomboid family intramembrane serine protease	-
MT996_RS09685 (MT996_09685)	-	1999279..1999992 (-)	714	WP_153828404.1	rhomboid family intramembrane serine protease	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49478.98 Da
• Isoelectric Point: 6.2624

>NTDB_id=673574 MT996_RS09650 WP_153828399.1 1994471..1995826(-) (radA) [Ornithobacterium rhinotracheale strain K223]
MAKAKTVFYCQNCGTRHAQWLGKCNACGEWNTIVEEVVEKNEPATPWKDDSVKTPVLFNIHDIPKTNEARITTKNAELDR
VLGGGLVLGSVVLLGGEPGIGKSTLLLQVALSLNHLKVLYVSGEESATQIKLRAERIGIGTDSCFVLTETQTQKIFKQAK
EIQPNVLIIDSIQTLQTQLVESSPGSVSQIRECTAELIRFAKQTNTPVILVGHITKEGNIAGPKILEHMVDVVLQFEGER
NHIYRLLRAQKNRFGSTAELGIYEMQGVGLREVSNPSEVLISAKDQPLSGNAVASTMEGMRPMLIEIQALVSTAVYGTPQ
RSTTGYDIKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIRVDDPAIDLAVVCAILSSYENETLPDNCCFAAEVGLSGEIR
PVSRVDQRISEAEKLGYDVIFISKYNKVNTSNFNIRVEMLGNIGDLYKLLF

Nucleotide

• Length: 1356 bp

>NTDB_id=673574 MT996_RS09650 WP_153828399.1 1994471..1995826(-) (radA) [Ornithobacterium rhinotracheale strain K223]
ATGGCTAAAGCTAAAACCGTTTTTTATTGTCAGAATTGTGGGACACGCCACGCGCAGTGGCTTGGGAAATGTAACGCTTG
TGGAGAGTGGAATACCATTGTAGAAGAAGTCGTGGAGAAAAATGAACCCGCCACACCATGGAAAGACGATAGCGTAAAAA
CGCCCGTTTTGTTTAATATTCATGATATTCCTAAGACCAACGAAGCCAGAATTACTACCAAAAATGCCGAGCTCGATAGA
GTTTTGGGCGGAGGATTGGTGTTAGGTTCTGTGGTGCTTTTGGGCGGAGAGCCAGGCATTGGGAAATCTACGCTTTTGCT
GCAAGTGGCTTTAAGCCTAAATCATTTAAAGGTTTTGTATGTTTCGGGAGAGGAAAGTGCCACGCAAATTAAACTCCGTG
CCGAGCGCATAGGGATTGGGACAGATTCTTGCTTTGTTTTGACCGAAACACAGACGCAAAAAATCTTTAAACAAGCCAAA
GAAATTCAGCCCAATGTTTTAATTATAGATTCAATTCAGACATTGCAGACGCAATTGGTGGAATCTTCGCCAGGGAGTGT
TTCGCAAATCAGAGAATGCACTGCAGAGCTCATTCGTTTTGCCAAGCAAACCAATACGCCCGTGATTTTGGTGGGGCATA
TTACCAAAGAAGGAAACATTGCAGGACCTAAAATACTGGAGCACATGGTGGATGTGGTGTTGCAATTTGAGGGTGAAAGA
AATCATATTTACAGATTATTGCGTGCGCAGAAAAACCGATTTGGCTCTACGGCAGAATTAGGAATCTATGAAATGCAAGG
TGTGGGATTGCGAGAGGTGAGCAACCCGAGCGAAGTTTTGATTTCGGCAAAAGACCAGCCGCTCAGCGGAAATGCCGTGG
CATCTACCATGGAGGGCATGCGACCGATGTTAATTGAGATTCAAGCCTTGGTGAGCACGGCGGTGTATGGCACGCCACAA
CGCTCCACTACGGGCTATGATATTAAAAGACTTAATATGCTTTTGGCGGTGCTAGAAAAAAGAGCAGGTTTTCAATTGGG
AGCTAAAGATGTATTTTTGAACATCACGGGTGGAATCCGTGTAGATGATCCTGCGATAGATTTAGCAGTGGTTTGTGCGA
TTTTATCGTCTTATGAAAACGAAACATTGCCAGATAATTGTTGTTTTGCTGCAGAAGTAGGATTGAGTGGAGAAATTAGA
CCAGTTAGTCGTGTCGATCAGCGTATTTCCGAAGCCGAAAAATTAGGATATGATGTGATTTTTATTTCTAAATACAATAA
AGTCAATACCTCAAATTTCAACATTAGAGTAGAAATGCTCGGCAATATTGGAGATTTGTACAAATTGCTATTTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (340-426)

• AAA domain (AAA_25) (66-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.463	95.787	0.483
radA	Streptococcus pneumoniae Rx1	50.588	94.235	0.477
radA	Streptococcus pneumoniae D39	50.588	94.235	0.477
radA	Streptococcus pneumoniae R6	50.588	94.235	0.477
radA	Streptococcus pneumoniae TIGR4	50.588	94.235	0.477
radA	Streptococcus mitis SK321	50.588	94.235	0.477
radA	Streptococcus mitis NCTC 12261	50.588	94.235	0.477