Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH775_RS35015 Genome accession   NZ_CP109301
Coordinates   7728325..7730058 (-) Length   577 a.a.
NCBI ID   WP_406478040.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01615     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7723325..7735058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS35005 (OH775_34945) - 7724751..7726115 (+) 1365 WP_327428527.1 RNA polymerase sigma factor -
  OH775_RS35010 (OH775_34950) rcrQ 7726346..7728325 (-) 1980 WP_406478038.1 ABC transporter ATP-binding protein Regulator
  OH775_RS35015 (OH775_34955) rcrP 7728325..7730058 (-) 1734 WP_406478040.1 ABC transporter ATP-binding protein Regulator
  OH775_RS35020 (OH775_34960) - 7730258..7731712 (-) 1455 WP_406478042.1 FGGY family carbohydrate kinase -
  OH775_RS35025 (OH775_34965) - 7731853..7732158 (-) 306 WP_406478044.1 YtxH domain-containing protein -
  OH775_RS35045 - 7732950..7733066 (-) 117 Protein_6934 MOSC domain-containing protein -
  OH775_RS35050 (OH775_34985) - 7733240..7734454 (-) 1215 WP_406478046.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62538.74 Da        Isoelectric Point: 5.7485

>NTDB_id=673572 OH775_RS35015 WP_406478040.1 7728325..7730058(-) (rcrP) [Streptomyces sp. NBC_01615]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSSGAVMIGISMAQVVCNIGAVYFGA
RTASAVGRDIRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPILGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673572 OH775_RS35015 WP_406478040.1 7728325..7730058(-) (rcrP) [Streptomyces sp. NBC_01615]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACTTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGTCCTCCGGCGCCGTGATGATCGGCATCTCGATGGCGCAGGTCGTCTGCAACATCGGTGCCGTGTACTTCGGCGCC
CGTACGGCGTCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGATCGCCGTGGTGCCGATCCTCGGCATCGGAGTGACTCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCCAGGAGGTTCTCGACACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGAACGGTAGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTGCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGACCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAACGTGTCCGGTGGTCAGCGCCAGCGCCTG
GCCATCGCCCGTACGCTCGTCCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGCGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGGCGGCACCACGAACTGATGGCGGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399