Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OH775_RS30150 Genome accession   NZ_CP109301
Coordinates   6615744..6616742 (+) Length   332 a.a.
NCBI ID   WP_327429411.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01615     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6610744..6621742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS30125 (OH775_30060) - 6611034..6611678 (+) 645 WP_369260098.1 TetR/AcrR family transcriptional regulator -
  OH775_RS30130 (OH775_30065) - 6611820..6613373 (+) 1554 WP_406476770.1 MFS transporter -
  OH775_RS30135 (OH775_30070) - 6613557..6614060 (-) 504 WP_327429414.1 MarR family transcriptional regulator -
  OH775_RS30140 (OH775_30075) - 6614240..6615007 (+) 768 WP_406483212.1 dioxygenase -
  OH775_RS30145 (OH775_30080) - 6615039..6615569 (-) 531 WP_406476773.1 GNAT family N-acetyltransferase -
  OH775_RS30150 (OH775_30085) rpoS 6615744..6616742 (+) 999 WP_327429411.1 sigma-70 family RNA polymerase sigma factor Regulator
  OH775_RS30155 (OH775_30090) - 6617410..6618069 (+) 660 WP_406476775.1 TetR family transcriptional regulator -
  OH775_RS30160 (OH775_30095) - 6618066..6618833 (+) 768 WP_406476777.1 glucose 1-dehydrogenase -
  OH775_RS30165 (OH775_30100) - 6618811..6619848 (-) 1038 WP_406476779.1 helix-turn-helix transcriptional regulator -
  OH775_RS30170 (OH775_30105) - 6619911..6621449 (+) 1539 WP_406476781.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37092.85 Da        Isoelectric Point: 5.0475

>NTDB_id=673559 OH775_RS30150 WP_327429411.1 6615744..6616742(+) (rpoS) [Streptomyces sp. NBC_01615]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAAAGAD
ASREELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=673559 OH775_RS30150 WP_327429411.1 6615744..6616742(+) (rpoS) [Streptomyces sp. NBC_01615]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTGCGGCCGGGGCGGAC
GCGTCCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGGGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
ACAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTCGACTCGACACCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAACAGTCGGTCATGACCTTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTGGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364