Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MT999_RS01275 Genome accession   NZ_CP094845
Coordinates   237333..238688 (+) Length   451 a.a.
NCBI ID   WP_014791364.1    Uniprot ID   I4A1K5
Organism   Ornithobacterium rhinotracheale strain 97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232333..243688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT999_RS01240 (MT999_01240) - 233170..233883 (+) 714 WP_014791358.1 rhomboid family intramembrane serine protease -
  MT999_RS01245 (MT999_01245) - 233874..234731 (+) 858 WP_014791359.1 rhomboid family intramembrane serine protease -
  MT999_RS01255 (MT999_01255) rfbD 234961..235818 (+) 858 WP_014791360.1 dTDP-4-dehydrorhamnose reductase -
  MT999_RS01260 (MT999_01260) - 235893..236282 (-) 390 WP_014791361.1 HIT family protein -
  MT999_RS01265 (MT999_01265) greA 236284..236769 (-) 486 WP_014791362.1 transcription elongation factor GreA -
  MT999_RS01270 (MT999_01270) - 236867..237328 (+) 462 WP_014791363.1 Rieske (2Fe-2S) protein -
  MT999_RS01275 (MT999_01275) radA 237333..238688 (+) 1356 WP_014791364.1 DNA repair protein RadA Machinery gene
  MT999_RS01280 (MT999_01280) - 238750..239343 (-) 594 WP_014791365.1 LutC/YkgG family protein -
  MT999_RS01285 (MT999_01285) - 239433..240818 (-) 1386 WP_014791366.1 lactate utilization protein B -
  MT999_RS01290 (MT999_01290) - 240833..241570 (-) 738 WP_014791367.1 (Fe-S)-binding protein -
  MT999_RS01295 (MT999_01295) - 241749..242456 (+) 708 WP_036601865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49444.99 Da        Isoelectric Point: 6.4982

>NTDB_id=673556 MT999_RS01275 WP_014791364.1 237333..238688(+) (radA) [Ornithobacterium rhinotracheale strain 97]
MAKAKTVFYCQNCGTRHAQWLGKCNACGEWNTIVEEVVEKNAPATPWKDDSIKTPVLFNIHDIPKTNEARITTKNGELDR
VLGGGLVLGSVVLLGGEPGIGKSTLLLQVALSLNHLKVLYVSGEESATQIKLRAERIGIGTDSCFVLTETQTQKIFKQAK
EIQPNVLIIDSIQTLQTQLVESSPGSVSQIRECTAELIRFAKQTNTPVILVGHITKEGNIAGPKILEHMVDVVLQFEGER
NHIYRLLRAQKNRFGSTAELGIYEMQGVGLREVSNPSEVLISAKDQPLSGNAVASTMEGIRPMLIEIQALVSTAVYGTPQ
RSTTGYDIKRLNMLLAVLEKRAGFQLGVKDVFLNITGGIRVDDPAIDLAVVCAILSSYENETLPDNCCFAAEVGLSGEIR
PVSRVEQRISEAEKLGYDVIFISKYNKVNTSNFNIRVEMLGNIGDLYKLLF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=673556 MT999_RS01275 WP_014791364.1 237333..238688(+) (radA) [Ornithobacterium rhinotracheale strain 97]
ATGGCTAAAGCTAAAACCGTTTTTTATTGTCAGAATTGTGGGACACGCCATGCGCAGTGGCTTGGGAAGTGCAATGCCTG
TGGCGAGTGGAATACCATTGTAGAAGAAGTGGTGGAGAAAAATGCACCCGCTACACCATGGAAAGATGATAGCATAAAAA
CACCTGTATTGTTTAATATTCATGATATTCCAAAGACCAACGAAGCCAGAATTACTACCAAAAATGGTGAGCTCGATAGA
GTTTTGGGCGGAGGATTGGTTTTAGGTTCTGTTGTGCTTTTGGGCGGAGAGCCAGGCATTGGGAAATCTACGCTTTTGTT
GCAAGTGGCTTTAAGCCTAAATCATTTAAAGGTTTTGTATGTTTCTGGAGAGGAAAGTGCCACGCAAATTAAACTCCGTG
CCGAGCGCATAGGGATTGGGACAGATTCTTGTTTTGTTTTGACAGAAACACAGACGCAAAAAATCTTTAAACAAGCCAAA
GAAATTCAGCCCAATGTTTTAATTATAGATTCAATTCAGACATTGCAGACGCAATTGGTGGAATCTTCGCCAGGGAGTGT
TTCGCAAATCAGAGAATGCACGGCAGAGCTCATTCGTTTTGCCAAACAAACCAATACGCCCGTGATTTTGGTGGGGCATA
TTACCAAAGAAGGAAATATTGCGGGACCTAAAATACTGGAACATATGGTGGATGTGGTGTTGCAATTTGAGGGCGAAAGA
AATCATATTTACAGATTATTGCGTGCGCAGAAAAACCGATTTGGCTCTACGGCAGAATTAGGAATCTATGAAATGCAAGG
TGTGGGATTGCGAGAGGTGAGCAACCCGAGCGAAGTTTTGATTTCGGCAAAAGACCAACCGCTCAGTGGAAATGCCGTGG
CATCTACCATGGAGGGGATCCGACCGATGTTAATTGAGATTCAAGCCTTGGTGAGCACGGCGGTATATGGAACGCCACAA
CGCTCCACCACGGGCTATGATATTAAAAGACTTAATATGCTTTTGGCGGTGCTAGAAAAAAGAGCAGGCTTTCAATTGGG
GGTCAAAGATGTATTTTTGAACATCACGGGCGGAATCCGTGTAGATGATCCTGCGATAGATTTAGCAGTGGTTTGTGCGA
TTTTATCGTCTTATGAAAACGAAACTTTGCCAGATAATTGTTGTTTTGCCGCAGAGGTAGGGCTGAGTGGGGAAATTAGA
CCCGTTAGTCGTGTGGAGCAGCGTATTTCCGAAGCCGAAAAATTAGGGTATGATGTGATTTTTATTTCTAAATACAATAA
AGTCAATACCTCAAATTTCAACATTAGAGTAGAAATGCTCGGCAATATTGGGGATTTATATAAATTGCTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(340-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4A1K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.039

96.009

0.49
  radA Streptococcus mitis SK321

50.935

94.9

0.483
  radA Streptococcus pneumoniae Rx1

50.935

94.9

0.483
  radA Streptococcus pneumoniae D39

50.935

94.9

0.483
  radA Streptococcus pneumoniae R6

50.935

94.9

0.483
  radA Streptococcus pneumoniae TIGR4

50.935

94.9

0.483
  radA Streptococcus mitis NCTC 12261

50.935

94.9

0.483