Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA21_RS01120 Genome accession   NZ_CP094825
Coordinates   247822..249192 (+) Length   456 a.a.
NCBI ID   WP_073343636.1    Uniprot ID   A0A9Q2QPE5
Organism   Staphylococcus ureilyticus strain IVB6236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 242822..254192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA21_RS01100 (MUA21_01095) - 242957..243418 (+) 462 WP_019468588.1 CtsR family transcriptional regulator -
  MUA21_RS01105 (MUA21_01100) - 243443..243994 (+) 552 WP_046207696.1 UvrB/UvrC motif-containing protein -
  MUA21_RS01110 (MUA21_01105) - 243987..244997 (+) 1011 WP_198644472.1 protein arginine kinase -
  MUA21_RS01115 (MUA21_01110) - 245009..247471 (+) 2463 WP_046207694.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA21_RS01120 (MUA21_01115) radA 247822..249192 (+) 1371 WP_073343636.1 DNA repair protein RadA Machinery gene
  MUA21_RS01125 (MUA21_01120) - 249267..250325 (+) 1059 WP_262561619.1 PIN/TRAM domain-containing protein -
  MUA21_RS01130 (MUA21_01125) gltX 250764..252218 (+) 1455 WP_046207691.1 glutamate--tRNA ligase -
  MUA21_RS01135 (MUA21_01130) cysE 252542..253183 (+) 642 WP_046207703.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50407.88 Da        Isoelectric Point: 7.2493

>NTDB_id=673468 MUA21_RS01120 WP_073343636.1 247822..249192(+) (radA) [Staphylococcus ureilyticus strain IVB6236]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIIEQKSTSPKHGVRSRENTSKVQKLNDIKHETTPRVKTNSAEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQEKNVLYITGEESLNQTKLRADRLDEDSSQLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIIIATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRIIIPESNIGGWEFPSNIKVIGVTNVHEALKYALSKH

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=673468 MUA21_RS01120 WP_073343636.1 247822..249192(+) (radA) [Staphylococcus ureilyticus strain IVB6236]
TTGGCCAAAAAGAAAGTGATTTTTGAATGCATGGCATGTGGTTATCAGTCACCTAAATGGATGGGGAAATGTCCTAACTG
TGGTGGATGGAATCAAATGGAAGAAATCATAGAACAGAAATCGACAAGTCCGAAACATGGTGTGCGCAGTCGTGAAAATA
CATCCAAAGTACAGAAGTTAAATGATATAAAGCATGAGACAACACCACGTGTTAAAACGAATTCAGCAGAGTTTAATCGA
GTGCTTGGTGGCGGGATCGTTAATGGTTCACTTGTGTTGATTGGTGGCGATCCAGGTATCGGTAAATCAACACTATTGCT
TCAAATATGTGCAGCGTTATCACAAGAGAAAAACGTTTTATATATAACTGGTGAAGAATCATTAAATCAAACAAAATTAA
GAGCAGATCGATTAGATGAAGATTCAAGTCAATTAAATGTATTTGCAGAAACAGATTTAGAAGTGATACATGAAACAGTT
AAACAATTGAAGCCTGATTTGCTTGTTGTAGATTCTATTCAGACTATTTTTCACCCTGAAATCAGTTCTGCACCCGGTTC
GGTATCTCAGGTGAGAGAGAGTACACAGAGCTTGATGAATATAGCTAAACAACTAAATATCGCGACGTTTATTGTTGGTC
ACGTTACGAAAGAAGGTCAGATTGCGGGACCTCGTTTGCTAGAACATATGGTGGATACGGTGCTTTATTTTGAAGGTGAT
GAGCATCATGCTTATCGGATTTTAAGAGCGGTAAAAAATCGCTTTGGTTCTACAAATGAAATGGGTATTTTTGAAATGAA
ACAGAGTGGATTGAAAGGTGTTAAAAATCCTTCAGAAATGTTTTTAGAAGAACGTTCTACAAATGTTCCAGGTTCAACAA
TCGTGTCTACTATGGAAGGTACGCGACCATTATTAATTGAGGTTCAAGCGTTAGTAACACCCACAACATTTAATAATCCT
AGACGTATGGCGACAGGAATAGATCACAATCGTTTAAGTTTGTTAATGGCTGTATTAGAGAAAAAAGAAAATTATTTACT
GCAACAACAAGATGCCTATATTAAAGTAGCTGGTGGCGTAAGGTTAACAGAACCTGCTGTTGATTTAGGAATCATTATTG
CTACTGCCTCAAGCTTTAAAGATTTAACTGTGGATGGCTTAGACTGTTTTATCGGCGAAGTTGGTTTAACAGGGGAAGTG
AGACGTGTTTCTCGCATTGAACAACGTGTACAAGAAGCGGAAAAATTAGGTTTTAAACGCATTATTATTCCTGAATCTAA
TATTGGGGGTTGGGAATTCCCGAGCAACATTAAAGTCATTGGTGTGACAAATGTCCATGAGGCATTAAAATATGCCTTAT
CAAAACATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

100

0.651
  radA Streptococcus pneumoniae Rx1

59.031

99.561

0.588
  radA Streptococcus pneumoniae D39

59.031

99.561

0.588
  radA Streptococcus pneumoniae R6

59.031

99.561

0.588
  radA Streptococcus pneumoniae TIGR4

59.031

99.561

0.588
  radA Streptococcus mitis SK321

59.031

99.561

0.588
  radA Streptococcus mitis NCTC 12261

59.031

99.561

0.588