Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MUA60_RS03485 Genome accession   NZ_CP094824
Coordinates   714907..715878 (+) Length   323 a.a.
NCBI ID   WP_316964769.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6216     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709907..720878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA60_RS03465 (MUA60_03465) nrdI 710745..711143 (+) 399 WP_037588716.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MUA60_RS03470 (MUA60_03470) nrdE 711106..713211 (+) 2106 WP_262649743.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MUA60_RS03475 (MUA60_03475) nrdF 713240..714211 (+) 972 WP_262649745.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MUA60_RS03480 (MUA60_03480) - 714364..714780 (+) 417 WP_025905416.1 FixH family protein -
  MUA60_RS03485 (MUA60_03485) ceuB 714907..715878 (+) 972 WP_316964769.1 ABC transporter permease Machinery gene
  MUA60_RS03490 (MUA60_03490) - 715868..716833 (+) 966 WP_262649746.1 iron chelate uptake ABC transporter family permease subunit -
  MUA60_RS03495 (MUA60_03495) - 716830..717630 (+) 801 WP_262649748.1 ABC transporter ATP-binding protein -
  MUA60_RS03500 (MUA60_03500) - 717732..718769 (+) 1038 WP_262649750.1 siderophore ABC transporter substrate-binding protein -
  MUA60_RS03505 (MUA60_03505) murB 718814..719731 (-) 918 WP_262649751.1 UDP-N-acetylmuramate dehydrogenase -
  MUA60_RS03510 (MUA60_03510) - 719801..720322 (-) 522 Protein_705 GrpB family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35460.91 Da        Isoelectric Point: 10.7243

>NTDB_id=673433 MUA60_RS03485 WP_316964769.1 714907..715878(+) (ceuB) [Mammaliicoccus sciuri strain IVB6216]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPSHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIVFPEANILLKLLFATLLSLFGTILFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=673433 MUA60_RS03485 WP_316964769.1 714907..715878(+) (ceuB) [Mammaliicoccus sciuri strain IVB6216]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTCACATATATTAAATTTAACTGACGAACAGAAGAATATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGTGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATTCTATTTATGCAAATTCTCCGGAGAATTCAAT
TTAAAGATGTTATTTTTATACCGTTAGTTGGTATCATGCTTGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGTGGTAGATATGAAATTCT
TTACATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGGCTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTTAGAGGAGATCATTTGAAAAA
TGCATTGCCGCATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATTGGAAGATTAATTATATTCCCTT
ATGAAATTACTATTGGTTTAACAATTGGTGTAATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCTAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502