Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MUA76_RS11615 Genome accession   NZ_CP094823
Coordinates   2342502..2343473 (-) Length   323 a.a.
NCBI ID   WP_049319723.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6217     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2344166..2370447 2342502..2343473 flank 693


Gene organization within MGE regions


Location: 2342502..2370447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA76_RS11615 (MUA76_11600) ceuB 2342502..2343473 (-) 972 WP_049319723.1 ABC transporter permease Machinery gene
  MUA76_RS11620 (MUA76_11605) - 2343600..2344016 (-) 417 WP_049319722.1 FixH family protein -
  MUA76_RS11625 (MUA76_11610) nrdF 2344166..2345137 (-) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MUA76_RS11630 (MUA76_11615) nrdE 2345166..2347271 (-) 2106 WP_049319721.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MUA76_RS11635 (MUA76_11620) nrdI 2347234..2347632 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MUA76_RS11640 (MUA76_11625) - 2348008..2348892 (+) 885 WP_048539939.1 DMT family transporter -
  MUA76_RS11645 (MUA76_11630) queF 2348892..2349392 (+) 501 WP_048539940.1 preQ(1) synthase -
  MUA76_RS11650 (MUA76_11635) - 2349687..2351201 (+) 1515 WP_164960807.1 peptide MFS transporter -
  MUA76_RS11655 (MUA76_11640) - 2351600..2353102 (+) 1503 WP_049319719.1 peptide MFS transporter -
  MUA76_RS11660 (MUA76_11645) - 2353142..2353723 (-) 582 WP_048539943.1 5'-3'-deoxyribonucleotidase -
  MUA76_RS11665 (MUA76_11650) hisC 2353788..2354855 (-) 1068 WP_058591625.1 histidinol-phosphate transaminase -
  MUA76_RS11670 (MUA76_11655) - 2354958..2356472 (-) 1515 WP_049319717.1 ABC transporter permease/substrate-binding protein -
  MUA76_RS11675 (MUA76_11660) - 2356469..2357431 (-) 963 WP_164960810.1 ABC transporter ATP-binding protein -
  MUA76_RS11680 (MUA76_11665) recQ 2357521..2359299 (-) 1779 WP_262650857.1 DNA helicase RecQ -
  MUA76_RS11685 (MUA76_11670) - 2359322..2361193 (-) 1872 WP_262650858.1 ABC-F family ATP-binding cassette domain-containing protein -
  MUA76_RS11690 (MUA76_11675) - 2361279..2362094 (+) 816 WP_049319713.1 ZIP family metal transporter -
  MUA76_RS11695 (MUA76_11680) ltaS 2363095..2365035 (-) 1941 WP_262650859.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  MUA76_RS11700 (MUA76_11685) - 2365236..2366240 (-) 1005 WP_049319711.1 biotin-dependent carboxyltransferase family protein -
  MUA76_RS11705 (MUA76_11690) - 2366231..2366932 (-) 702 WP_049319710.1 carboxyltransferase domain-containing protein -
  MUA76_RS11710 (MUA76_11695) - 2366973..2367185 (-) 213 WP_049319709.1 hypothetical protein -
  MUA76_RS11715 (MUA76_11700) - 2367247..2368995 (-) 1749 WP_262650860.1 chorismate-binding protein -
  MUA76_RS11720 (MUA76_11705) - 2368973..2369575 (-) 603 WP_049319707.1 aminodeoxychorismate/anthranilate synthase component II -
  MUA76_RS11725 (MUA76_11710) queC 2369779..2370447 (+) 669 WP_025904757.1 7-cyano-7-deazaguanine synthase QueC -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35491.00 Da        Isoelectric Point: 10.7243

>NTDB_id=673424 MUA76_RS11615 WP_049319723.1 2342502..2343473(-) (ceuB) [Mammaliicoccus sciuri strain IVB6217]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTIGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=673424 MUA76_RS11615 WP_049319723.1 2342502..2343473(-) (ceuB) [Mammaliicoccus sciuri strain IVB6217]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAATTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCACATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.789

98.142

0.498