Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OH735_RS28265 Genome accession   NZ_CP109297
Coordinates   6094205..6094999 (-) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6089205..6099999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS28255 (OH735_28215) - 6090066..6092072 (+) 2007 WP_406386779.1 IucA/IucC family protein -
  OH735_RS28260 (OH735_28220) - 6092123..6094093 (+) 1971 WP_406384441.1 ATP-dependent DNA helicase -
  OH735_RS28265 (OH735_28225) dinR/lexA 6094205..6094999 (-) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  OH735_RS28270 (OH735_28230) nrdR 6095630..6096142 (+) 513 WP_406384442.1 transcriptional regulator NrdR -
  OH735_RS28275 (OH735_28235) - 6096302..6099202 (+) 2901 WP_406384443.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=673409 OH735_RS28265 WP_093898912.1 6094205..6094999(-) (dinR/lexA) [Streptomyces sp. NBC_01618]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=673409 OH735_RS28265 WP_093898912.1 6094205..6094999(-) (dinR/lexA) [Streptomyces sp. NBC_01618]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAACCCGTGCGCCCAGCGCGCTCGCTGCCCGGCCGACCTCCAGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGGTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTCCGTCGCGACCCCCATCGCCCGCGGGCGTACGAGGTCCGTGGCTCGGACCAGCCCAGCTCGCAGCCCA
CCGATACGACCGGGAAGCCCGCGGCGTCGTACGTGCCGCTCGTCGGCCGGATCGCAGCGGGTGGCCCGATCCTTGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTGCCCCGCCAGTTGGTCGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCCCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375