Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OH735_RS11375 Genome accession   NZ_CP109297
Coordinates   2396856..2398787 (+) Length   643 a.a.
NCBI ID   WP_406381257.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2391856..2403787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS11340 (OH735_11315) - 2391921..2392154 (-) 234 WP_406381253.1 type II toxin-antitoxin system VapB family antitoxin -
  OH735_RS11360 (OH735_11335) - 2393127..2393435 (+) 309 WP_406381254.1 YtxH domain-containing protein -
  OH735_RS11365 (OH735_11340) - 2393508..2394953 (+) 1446 WP_406381255.1 FGGY family carbohydrate kinase -
  OH735_RS11370 (OH735_11345) rcrP 2395123..2396856 (+) 1734 WP_406381256.1 ABC transporter ATP-binding protein Regulator
  OH735_RS11375 (OH735_11350) rcrQ 2396856..2398787 (+) 1932 WP_406381257.1 ABC transporter ATP-binding protein Regulator
  OH735_RS11380 (OH735_11355) - 2398854..2399948 (-) 1095 WP_406381258.1 RNA polymerase sigma factor -
  OH735_RS11385 (OH735_11360) dnaG 2400251..2402158 (-) 1908 WP_406381259.1 DNA primase -
  OH735_RS11390 (OH735_11365) - 2402244..2403503 (-) 1260 WP_406381260.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69328.86 Da        Isoelectric Point: 5.5866

>NTDB_id=673369 OH735_RS11375 WP_406381257.1 2396856..2398787(+) (rcrQ) [Streptomyces sp. NBC_01618]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAPEKASLYVMLAACVVSVGLSVVGPKILGRATDLVFAGVIGRRMPDGT
TKEQAVEGLRKTNSGLADMLSGVDFVPGHGIDFGAVRDVLLVALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLISSLLTIVGVLIMMFWVSPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGADPAPGTGERPKELLGSVSL
EKVSFRYDPEKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDVAKMSRDDLRSGIGMVLQD
TWLFGGSIAQNIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYSAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=673369 OH735_RS11375 WP_406381257.1 2396856..2398787(+) (rcrQ) [Streptomyces sp. NBC_01618]
ATGGCCGGTCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCCTCGAAGCG
GCTGCTGAAGCGCTTCGCTCCGGAGAAGGCCTCGCTGTACGTGATGCTGGCGGCCTGCGTGGTGAGCGTCGGGCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGATGCCCGACGGCACG
ACGAAGGAGCAGGCCGTGGAGGGCCTGCGCAAGACCAACAGCGGCCTCGCCGACATGCTTTCCGGGGTGGACTTCGTCCC
CGGTCACGGCATCGACTTCGGTGCGGTGCGCGACGTACTGCTGGTGGCGCTGGCGGTCTATGTCGGTGCGGGGCTGCTCA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGATATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGTCAGCTCATCAGCTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGGTCTCGCCGCTGCTGGCGCTGGTCGCTCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCCGCGAAGGTCGGCAAGCGG
TCGCAACCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCACTGTACGAGGCGGGCT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTGAACTATGTGCTGATCGCCGTC
GTCGGTGGTCTGCGGGTCGCTTCGGGTTCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCCGAGCGCATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCGCCGACCCCGCGCCCGGCACGGGTGAGCGCCCGAAGGAGCTGCTGGGCAGCGTCTCGCTG
GAGAAGGTGTCGTTCCGTTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAACGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGCGCGGGCAAGACCACGCTCGTCAATCTCCTGATGCGGTTCTACGAGGTGACGGGCGGTC
GGATCACGCTCGACGGGGTCGACGTGGCGAAGATGTCGCGCGACGACCTGCGGTCGGGAATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGTCGATAGCGCAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAAGAGATCGAGGA
GGCTGCGAGGGCCGCCCACGCCGACCGCTTCGTCCGCACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGCGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAGGCGACGAGCTCAGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGATGCCGACGTCATCCTGGTGATGGAGAACGGCTCGATCGTCGAAC
AGGGCACGCACGACGAACTGCTGGCTGCCGAGGGGGCGTACGCCCGGCTGTATTCGGCGCAGTTCGCGCAGGCGGTCGCC
GAAGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(58-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.684

96.89

0.375