Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH735_RS11370 Genome accession   NZ_CP109297
Coordinates   2395123..2396856 (+) Length   577 a.a.
NCBI ID   WP_406381256.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390123..2401856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS11330 (OH735_11305) - 2390656..2391252 (+) 597 WP_406381251.1 hypothetical protein -
  OH735_RS11335 (OH735_11310) - 2391517..2391924 (-) 408 WP_406381252.1 PIN domain nuclease -
  OH735_RS11340 (OH735_11315) - 2391921..2392154 (-) 234 WP_406381253.1 type II toxin-antitoxin system VapB family antitoxin -
  OH735_RS11360 (OH735_11335) - 2393127..2393435 (+) 309 WP_406381254.1 YtxH domain-containing protein -
  OH735_RS11365 (OH735_11340) - 2393508..2394953 (+) 1446 WP_406381255.1 FGGY family carbohydrate kinase -
  OH735_RS11370 (OH735_11345) rcrP 2395123..2396856 (+) 1734 WP_406381256.1 ABC transporter ATP-binding protein Regulator
  OH735_RS11375 (OH735_11350) rcrQ 2396856..2398787 (+) 1932 WP_406381257.1 ABC transporter ATP-binding protein Regulator
  OH735_RS11380 (OH735_11355) - 2398854..2399948 (-) 1095 WP_406381258.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62761.86 Da        Isoelectric Point: 5.3874

>NTDB_id=673368 OH735_RS11370 WP_406381256.1 2395123..2396856(+) (rcrP) [Streptomyces sp. NBC_01618]
MLIKLLRAHLGPYKKPILLLVLLQFLQTCASLYLPTLNADIIDNGVVKGDTGYILEFGGIMIAVSIGQVVCNMGAVFYGA
RTASALGRDVRASIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQERVDTVNQVLREQITGNRVIRAFVRDRYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVIP
PVKPVRELRAHGHLEVRGADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673368 OH735_RS11370 WP_406381256.1 2395123..2396856(+) (rcrP) [Streptomyces sp. NBC_01618]
GTGCTCATAAAACTCCTGCGGGCCCATCTCGGTCCGTACAAGAAACCCATCCTGTTGCTGGTCCTCCTCCAATTCCTGCA
GACCTGCGCCAGCCTGTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCATCATGATCGCCGTCAGCATCGGCCAGGTGGTCTGCAACATGGGGGCCGTCTTCTACGGCGCC
CGCACCGCGTCCGCCCTCGGCCGTGATGTCCGCGCGTCGATCTTCGACCGGGTGCAGTCGTTCTCCGCACGTGAGGTCGG
ACGGTTCGGCGCGCCCTCGTTGATCACGCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CCCTGATGGTTTCGGCGCCGATCATGTGCGTCGGTGGCATCATCATGGCACTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGCCTGATCGTCAAGCGGATGCGGCCGCTGTTTCGCACCATGCA
GGAGCGGGTCGACACGGTGAACCAGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACC
GTTACGAGGAGGAGCGCTTCCGCGGTGCCAACACCGAGCTGACCGATGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCCTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGATTCCG
CCCGTCAAGCCGGTGCGCGAGCTGCGCGCCCACGGTCATCTGGAGGTCCGCGGGGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGTCGGTGGATCTGGTGGCCCGCCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACCGTGAGCCTCGTGCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAACCCGGACGCCACCGACGAGGAGCTCTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGCCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGGCAGCGGCAGCGGCTG
GCGATCGCCAGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACCGA
CGCCGCGCTGCGCGGGGCACTCGCGCAGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAACGGGTGTCCACCATCC
GCGACGCCGACCGGATCCTGGTACTGGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAACTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.55

100

0.409