Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG987_RS29125 Genome accession   NZ_CP109296
Coordinates   6503106..6503900 (-) Length   264 a.a.
NCBI ID   WP_030974105.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01620     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6498106..6508900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG987_RS29110 (OG987_29115) - 6498147..6499028 (+) 882 WP_329450875.1 GNAT family N-acetyltransferase -
  OG987_RS29115 (OG987_29120) - 6499089..6500948 (+) 1860 WP_326745224.1 IucA/IucC family siderophore biosynthesis protein -
  OG987_RS29120 (OG987_29125) - 6500999..6502969 (+) 1971 WP_329450874.1 ATP-dependent DNA helicase -
  OG987_RS29125 (OG987_29130) dinR/lexA 6503106..6503900 (-) 795 WP_030974105.1 transcriptional repressor LexA Regulator
  OG987_RS29130 (OG987_29135) nrdR 6504445..6504957 (+) 513 WP_030974103.1 transcriptional regulator NrdR -
  OG987_RS29135 (OG987_29140) - 6505118..6508021 (+) 2904 WP_329450873.1 vitamin B12-dependent ribonucleotide reductase -
  OG987_RS29140 (OG987_29145) - 6508228..6508764 (-) 537 WP_313939543.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4241

>NTDB_id=673333 OG987_RS29125 WP_030974105.1 6503106..6503900(-) (dinR/lexA) [Streptomyces sp. NBC_01620]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=673333 OG987_RS29125 WP_030974105.1 6503106..6503900(-) (dinR/lexA) [Streptomyces sp. NBC_01620]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCAGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTACCCA
CCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTCCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAACCCAGCACGCAGCCGA
CCGACACGAGCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACGGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCTGCCATGTTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371