Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA42_RS13195 Genome accession   NZ_CP094819
Coordinates   2627505..2628875 (-) Length   456 a.a.
NCBI ID   WP_262642124.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2622505..2633875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA42_RS13170 (MUA42_13170) cysE 2622898..2623539 (-) 642 WP_025904850.1 serine O-acetyltransferase -
  MUA42_RS13175 (MUA42_13175) gltX 2623794..2625248 (-) 1455 WP_262642122.1 glutamate--tRNA ligase -
  MUA42_RS13180 (MUA42_13180) ispF 2625264..2625743 (-) 480 WP_103360793.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA42_RS13185 (MUA42_13185) ispD 2625736..2626422 (-) 687 WP_262642123.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA42_RS13190 (MUA42_13190) - 2626424..2627482 (-) 1059 WP_037589912.1 PIN/TRAM domain-containing protein -
  MUA42_RS13195 (MUA42_13195) radA 2627505..2628875 (-) 1371 WP_262642124.1 DNA repair protein RadA Machinery gene
  MUA42_RS13200 (MUA42_13200) - 2629031..2631493 (-) 2463 WP_262642125.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA42_RS13205 (MUA42_13205) - 2631510..2632517 (-) 1008 WP_025904843.1 protein arginine kinase -
  MUA42_RS13210 (MUA42_13210) - 2632518..2633054 (-) 537 WP_025904842.1 UvrB/UvrC motif-containing protein -
  MUA42_RS13215 (MUA42_13215) - 2633069..2633530 (-) 462 WP_025904841.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50467.20 Da        Isoelectric Point: 7.7103

>NTDB_id=673302 MUA42_RS13195 WP_262642124.1 2627505..2628875(-) (radA) [Mammaliicoccus sciuri strain IVB6228]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEHKETKGPKNTFKSDVPAQKIEKLKDVKEEDTPRIKTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVFHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVSGSTIVATMEGTRSILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIVIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=673302 MUA42_RS13195 WP_262642124.1 2627505..2628875(-) (radA) [Mammaliicoccus sciuri strain IVB6228]
ATGGCCAAAAAGAAAGTAATATTTGAGTGTTTAGCCTGCGGATATCAATCTCCAAAATGGATGGGGAAATGCCCTAATTG
TGGTGCATGGAACCAAATGGAAGAATCAATAGAACATAAAGAAACTAAAGGTCCTAAAAATACATTCAAGTCAGATGTAC
CCGCACAAAAAATAGAAAAATTAAAAGACGTTAAAGAAGAAGATACACCTAGAATTAAGACTAAAATCAATGAATTTAAT
CGCGTATTAGGTGGCGGTGTTGTAGAAGGTTCGCTTGTACTCATTGGTGGTGACCCTGGTATTGGTAAATCCACATTATT
ATTACAAATTTGTGCGGCTTTATCTCAACAAAAAAATGTCTTATATGTTTCAGGTGAAGAATCTGTAAGACAAACAAAAT
TAAGAGCTGAAAGATTAGTTGAAGATTCAGGAGAATTAAATGTTTATGCTGAAACGAATTTAGAGATTATACATAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTAATAGATTCCATTCAAACTGTCTTCCACCCTGAAGTCACTTCTGCGCCAGG
TTCTGTTTCTCAAGTTAGAGAATGTACACAAAATTTAATGCATATCGCAAAACAAATGAATATTGCTACATTTATTGTTG
GACACGTAACGAAAGATGGACAAATTGCTGGTCCACGTTTGTTAGAACATATGGTGGATACAGTATTATATTTTGAAGGC
GATACACATCATGCATACAGAATATTAAGAGCAGTTAAAAACCGTTTTGGTTCGACAAATGAAATGGGTATTTTTGAAAT
GAAGCAAACGGGTCTTAACGAAGTTAAAAATCCGTCTGAAATGTTCTTAGAAGAAAGAACGAAACATGTATCGGGTTCAA
CTATTGTGGCAACTATGGAAGGTACGAGATCTATTTTAGTTGAAGTACAAGCTTTAGTGACGCCAACGACTTTTCATAAT
CCACGAAGAATGGCAACAGGTATTGATCACAATAGATTAAGCTTATTGATGGCTGTATTAGAGAAGAAAGAGAATTTCTT
ATTACAACAACAAGACGCATATATCAAAATCGCCGGTGGTGTAAAATTAAGTGAACCCGCAGTAGATTTAAGTATTGTTA
TCGCGATAGCTTCAAGTTTCCAAGATAAACCTACTAAAGGTGATGATTGTTTCGTAGGTGAGGTTGGCTTAACAGGTGAA
GTAAGAAGGGTTGCTAGAATTGATCAACGTGTACAAGAAGCGGCTAAATTAGGATTTAAACGTATTATCATACCTAAAAA
TAATATTAAAGGTTTAGAATTCCCAGAAGGTACTGAAGTTATTGGCGTATCAACAACAAGAGAAGCATTGAAAATTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)

AAA domain (AAA_25)

(67-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.502

100

0.658
  radA Streptococcus pneumoniae Rx1

61.674

99.561

0.614
  radA Streptococcus pneumoniae D39

61.674

99.561

0.614
  radA Streptococcus pneumoniae R6

61.674

99.561

0.614
  radA Streptococcus pneumoniae TIGR4

61.674

99.561

0.614
  radA Streptococcus mitis NCTC 12261

61.674

99.561

0.614
  radA Streptococcus mitis SK321

61.674

99.561

0.614