Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OH768_RS46155 Genome accession   NZ_CP109293
Coordinates   9961218..9961481 (-) Length   87 a.a.
NCBI ID   WP_406462856.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01622     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9956218..9966481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS46140 (OH768_46075) - 9956762..9957712 (+) 951 WP_406462853.1 sugar ABC transporter substrate-binding protein -
  OH768_RS46145 (OH768_46080) folE 9958139..9958741 (-) 603 WP_359604630.1 GTP cyclohydrolase I FolE -
  OH768_RS46150 (OH768_46085) - 9958912..9960255 (-) 1344 WP_406462855.1 aminomethyl transferase family protein -
  OH768_RS46155 (OH768_46090) cytR 9961218..9961481 (-) 264 WP_406462856.1 substrate-binding domain-containing protein Regulator
  OH768_RS46160 - 9962050..9962208 (-) 159 Protein_9139 LacI family DNA-binding transcriptional regulator -
  OH768_RS46165 (OH768_46100) - 9962579..9963994 (+) 1416 WP_406462858.1 NAD-binding protein -
  OH768_RS46170 (OH768_46105) folP 9964164..9965054 (+) 891 WP_406462859.1 dihydropteroate synthase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9166.30 Da        Isoelectric Point: 4.5067

>NTDB_id=673261 OH768_RS46155 WP_406462856.1 9961218..9961481(-) (cytR) [Streptomyces sp. NBC_01622]
MTAIAGFNDDVALRVLTALRDLGRRAPDDTAVIGFDDNGYGEHVVPSLTTINVDGEAHGRLSARLALGLDTSGLEPPPAR
VVVRESI

Nucleotide


Download         Length: 264 bp        

>NTDB_id=673261 OH768_RS46155 WP_406462856.1 9961218..9961481(-) (cytR) [Streptomyces sp. NBC_01622]
GTGACCGCGATCGCCGGCTTCAACGACGACGTGGCCCTGCGCGTCCTCACCGCCCTGCGCGACCTGGGCCGGCGCGCGCC
GGACGACACGGCCGTGATCGGCTTCGACGACAACGGCTACGGCGAACACGTCGTCCCCTCCCTGACCACGATCAACGTCG
ACGGCGAGGCCCACGGCCGGCTCAGCGCCCGGCTCGCCCTGGGGCTCGACACCAGTGGGCTTGAGCCCCCGCCCGCGCGG
GTCGTCGTGCGCGAGTCGATCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(2-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.556

100

0.368