Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7R29_RS01880 Genome accession   NZ_AP022295
Coordinates   412275..412742 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain BEC1-S17-ESBL-07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 407275..417742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R29_RS01855 (BE1S17E07_03710) rpsG 407416..407886 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  H7R29_RS01860 (BE1S17E07_03720) fusA 407983..410097 (+) 2115 WP_000124700.1 elongation factor G -
  H7R29_RS01865 (BE1S17E07_03730) tuf 410168..411352 (+) 1185 WP_000031783.1 elongation factor Tu -
  H7R29_RS01870 (BE1S17E07_03740) bfd 411535..411729 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  H7R29_RS01875 (BE1S17E07_03750) bfr 411802..412278 (+) 477 WP_000675515.1 bacterioferritin -
  H7R29_RS01880 (BE1S17E07_03760) pilD 412275..412742 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  H7R29_RS01885 (BE1S17E07_03770) rpsJ 413121..413432 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  H7R29_RS01890 (BE1S17E07_03780) rplC 413465..414094 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  H7R29_RS01895 (BE1S17E07_03790) rplD 414105..414710 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  H7R29_RS01900 (BE1S17E07_03800) rplW 414707..415009 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  H7R29_RS01905 (BE1S17E07_03810) rplB 415027..415848 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  H7R29_RS01910 (BE1S17E07_03820) rpsS 415865..416143 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  H7R29_RS01915 (BE1S17E07_03830) rplV 416158..416490 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  H7R29_RS01920 (BE1S17E07_03840) rpsC 416508..417209 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  H7R29_RS01925 (BE1S17E07_03850) rplP 417222..417632 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=67325 H7R29_RS01880 WP_000340171.1 412275..412742(-) (pilD) [Escherichia coli strain BEC1-S17-ESBL-07]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=67325 H7R29_RS01880 WP_000340171.1 412275..412742(-) (pilD) [Escherichia coli strain BEC1-S17-ESBL-07]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361

Multiple sequence alignment