Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH768_RS35415 Genome accession   NZ_CP109293
Coordinates   7656705..7658438 (-) Length   577 a.a.
NCBI ID   WP_406460011.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01622     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7651705..7663438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS35405 (OH768_35350) - 7653310..7654620 (+) 1311 WP_406460009.1 RNA polymerase sigma factor -
  OH768_RS35410 (OH768_35355) rcrQ 7654777..7656705 (-) 1929 WP_406460010.1 ABC transporter ATP-binding protein Regulator
  OH768_RS35415 (OH768_35360) rcrP 7656705..7658438 (-) 1734 WP_406460011.1 ABC transporter ATP-binding protein Regulator
  OH768_RS35420 (OH768_35365) - 7658590..7660047 (-) 1458 WP_406460012.1 FGGY-family carbohydrate kinase -
  OH768_RS35425 (OH768_35370) - 7660099..7660404 (-) 306 WP_406460013.1 YtxH domain-containing protein -
  OH768_RS35445 (OH768_35390) - 7661408..7661896 (-) 489 WP_406465578.1 transposase -
  OH768_RS35450 (OH768_35395) - 7661797..7662975 (-) 1179 WP_406460014.1 transposase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62706.97 Da        Isoelectric Point: 6.2515

>NTDB_id=673241 OH768_RS35415 WP_406460011.1 7656705..7658438(-) (rcrP) [Streptomyces sp. NBC_01622]
MLIRLLRTYLRPYRKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYYGA
RTAAALGRDIRGAIFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSGV
LIAVVPTLTICVTIIVRRLRPLFRSMQVRLDSVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PVAPVFELRRHGHLEVRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVAVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLNSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAHETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673241 OH768_RS35415 WP_406460011.1 7656705..7658438(-) (rcrP) [Streptomyces sp. NBC_01622]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCTTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACCGGTTACA
TCCTGTCGTTCGGTGCCCTGATGATCGGGATCTCGCTCGTCCAGGTCGTCTGCAACACCGGTGCCGTCTACTACGGCGCC
CGCACCGCGGCGGCCCTCGGCCGGGACATCCGGGGCGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGCTCGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGATCGCGGTGGTGCCGACGCTGACGATCTGCGTGACGATCATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTGGACTCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCGTCCGCGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACTCCGATCTGACCGAGATGCAGCTGAAGACGGGCAACCTGCTCGCGCTG
ATGTTCCCGGTCGTCATGACGACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGTGCGCACCGGATCGACAGCGG
TGGGATGCAGATCGGTGATCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGACACGGAGAGCAGTGTCGTGCCG
CCGGTGGCTCCCGTCTTCGAACTGCGCCGGCACGGGCATCTGGAGGTCCGCGGGGTCGGCTTCTGTTACCCGGGCGCCGA
GGAACCCGTGCTGAAGTCCATCGACCTGGTGGCCCGCCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGAA
AGTCCACCCTTCTGAGTCTGGTCCCGCGCCTGGTTGACGCGACCGACGGCGAGGTCCTCGTCGACGGTGTCGCCGTGTCG
ACCATCGACCCGGTGCTGCTGGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACGGTCGCGAC
CAACCTTCGCTACGGCAACCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGGCTGAACTCCCCCATCGCGCAGGGCGGCACGAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACACTCGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCCCTCGCGCACGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCA
GGGACGCCGACCGGATCGTCGTACTCGACGAGGGACGGGTTGTGGGGACGGGCCGCCATCACGAGCTGATGGCGGACAAC
GAGACGTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393