Detailed information NTG0673210

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OH768_RS21790
• Genome accession: NZ_CP109293
• Coordinates: 4858142..4859140 (-)
• Length: 332 a.a.
• NCBI ID: WP_406456043.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01622
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4853142..4864140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH768_RS21775 (OH768_21725)	-	4854320..4855831 (-)	1512	WP_406456037.1	MFS transporter	-
OH768_RS21780 (OH768_21730)	-	4855923..4856906 (+)	984	WP_406456039.1	helix-turn-helix transcriptional regulator	-
OH768_RS21785 (OH768_21735)	-	4856955..4857671 (-)	717	WP_406456041.1	TetR/AcrR family transcriptional regulator	-
OH768_RS21790 (OH768_21740)	rpoS	4858142..4859140 (-)	999	WP_406456043.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OH768_RS21795 (OH768_21745)	-	4859322..4859852 (+)	531	WP_406456045.1	GNAT family N-acetyltransferase	-
OH768_RS21800 (OH768_21750)	-	4859904..4860695 (-)	792	WP_406456047.1	dioxygenase	-
OH768_RS21805 (OH768_21755)	-	4860794..4861300 (+)	507	WP_362971869.1	MarR family transcriptional regulator	-
OH768_RS21810 (OH768_21760)	-	4861413..4862975 (-)	1563	WP_406456050.1	MFS transporter	-
OH768_RS21815 (OH768_21765)	-	4863104..4863748 (-)	645	WP_406456052.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37310.99 Da
• Isoelectric Point: 5.0568

>NTDB_id=673210 OH768_RS21790 WP_406456043.1 4858142..4859140(-) (rpoS) [Streptomyces sp. NBC_01622]
MATRAVARRKSASGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLDGEEESQAD
ATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHEEIAAELDTTPERVTNVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGMEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide

• Length: 999 bp

>NTDB_id=673210 OH768_RS21790 WP_406456043.1 4858142..4859140(-) (rpoS) [Streptomyces sp. NBC_01622]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCCGGCGAGACCTCCGGCGTGGCACGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCGCAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTCCTCGACGGCGAGGAGGAGTCCCAGGCGGAC
GCCACCCGCGAGGAGCTGGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGGTCGAACCTCCGTCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCGATCGCCGACCAGTCCCGGACCATCCGGCTTCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGAGGAGATCGCCGCCGAACTGGACACGACCCCGGAGC
GCGTGACGAACGTCCTGGACTGGGCGCGCGATCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACGCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATGGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCAGCCAGACCGGTTTCGACGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.803	90.06	0.367