Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA23_RS13385 Genome accession   NZ_CP094816
Coordinates   2647578..2648948 (-) Length   456 a.a.
NCBI ID   WP_025904845.1    Uniprot ID   A0A2T4RU06
Organism   Mammaliicoccus sciuri strain IVB6231     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2642578..2653948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA23_RS13360 (MUA23_13335) cysE 2642971..2643612 (-) 642 WP_025904850.1 serine O-acetyltransferase -
  MUA23_RS13365 (MUA23_13340) gltX 2643867..2645321 (-) 1455 WP_106417394.1 glutamate--tRNA ligase -
  MUA23_RS13370 (MUA23_13345) ispF 2645337..2645816 (-) 480 WP_106417393.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA23_RS13375 (MUA23_13350) ispD 2645809..2646495 (-) 687 WP_058590881.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA23_RS13380 (MUA23_13355) - 2646497..2647555 (-) 1059 WP_078355007.1 PIN/TRAM domain-containing protein -
  MUA23_RS13385 (MUA23_13360) radA 2647578..2648948 (-) 1371 WP_025904845.1 DNA repair protein RadA Machinery gene
  MUA23_RS13390 (MUA23_13365) - 2649104..2651566 (-) 2463 WP_106417392.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA23_RS13395 (MUA23_13370) - 2651583..2652590 (-) 1008 WP_058590883.1 protein arginine kinase -
  MUA23_RS13400 (MUA23_13375) - 2652591..2653127 (-) 537 WP_058590884.1 UvrB/UvrC motif-containing protein -
  MUA23_RS13405 (MUA23_13380) - 2653142..2653603 (-) 462 WP_025904841.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50477.24 Da        Isoelectric Point: 7.7103

>NTDB_id=673209 MUA23_RS13385 WP_025904845.1 2647578..2648948(-) (radA) [Mammaliicoccus sciuri strain IVB6231]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEHKETKGPKNTFKSDVPAQKIEKLKDVKEEDTPRIKTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVFHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIVIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=673209 MUA23_RS13385 WP_025904845.1 2647578..2648948(-) (radA) [Mammaliicoccus sciuri strain IVB6231]
ATGGCCAAAAAGAAAGTAATATTTGAGTGTTTAGCCTGCGGATATCAATCTCCAAAATGGATGGGGAAATGCCCTAATTG
TGGTGCATGGAACCAAATGGAAGAATCAATAGAACATAAAGAAACTAAAGGTCCTAAAAATACATTCAAGTCAGATGTAC
CCGCACAAAAAATAGAAAAATTAAAAGACGTTAAAGAAGAAGATACACCTAGAATTAAGACTAAAATCAATGAATTTAAT
CGTGTATTAGGTGGCGGTGTTGTAGAAGGTTCGCTTGTACTTATTGGTGGTGACCCTGGTATTGGTAAATCTACATTATT
ATTACAAATTTGTGCGGCTTTATCTCAACAAAAAAATGTCTTATATGTTTCAGGTGAAGAATCTGTAAGACAAACGAAAT
TAAGAGCTGAAAGATTAGTTGAAGATTCAGGAGAATTAAATGTTTATGCTGAAACGAATTTAGAGATTATACATAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTTATAGATTCCATTCAAACTGTCTTCCACCCTGAAGTTACTTCTGCTCCAGG
TTCTGTTTCTCAAGTTAGAGAATGTACACAAAATTTAATGCATATCGCAAAACAAATGAACATTGCTACATTTATTGTAG
GACATGTAACGAAAGATGGACAAATTGCTGGGCCACGTTTGTTAGAACATATGGTTGATACAGTATTATATTTTGAAGGC
GATACACATCATGCATACAGAATATTAAGAGCAGTTAAAAACCGTTTTGGTTCGACAAATGAAATGGGTATTTTTGAAAT
GAAGCAAACGGGTCTTAATGAAGTTAAAAATCCGTCTGAAATGTTCTTAGAAGAAAGAACGAAACATGTATCGGGTTCAA
CTATTGTGGCAACTATGGAAGGTACGAGACCTATTTTAGTTGAAGTACAAGCTTTAGTGACGCCAACGACTTTTCATAAT
CCACGAAGAATGGCAACAGGTATTGATCACAATAGATTAAGCTTATTGATGGCTGTATTAGAGAAGAAAGAGAATTTCTT
ATTACAACAACAAGACGCATATATCAAAATTGCCGGTGGTGTAAAATTAAGTGAACCCGCAGTAGATTTAAGTATTGTTA
TCGCGATAGCTTCAAGTTTCCAAGATAAACCTACTAAAGGTGATGATTGTTTCGTAGGTGAGGTTGGCTTAACAGGTGAA
GTAAGAAGGGTTGCTAGAATTGATCAACGTGTACAAGAAGCGGCTAAATTAGGATTTAAACGTATTATCATACCTAAAAA
TAATATTAAAGGTTTAGAATTCCCGGAAGGTACAGAAGTTATTGGCGTATCAACAACAAGAGAAGCATTGAAAATTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4RU06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.66
  radA Streptococcus pneumoniae Rx1

61.894

99.561

0.616
  radA Streptococcus pneumoniae D39

61.894

99.561

0.616
  radA Streptococcus pneumoniae R6

61.894

99.561

0.616
  radA Streptococcus pneumoniae TIGR4

61.894

99.561

0.616
  radA Streptococcus mitis NCTC 12261

61.894

99.561

0.616
  radA Streptococcus mitis SK321

61.894

99.561

0.616