Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OH768_RS14525 Genome accession   NZ_CP109293
Coordinates   3268338..3269117 (+) Length   259 a.a.
NCBI ID   WP_026151025.1    Uniprot ID   A0ABU4FGW0
Organism   Streptomyces sp. NBC_01622     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3263338..3274117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS14515 (OH768_14490) - 3264161..3267055 (-) 2895 WP_406453704.1 vitamin B12-dependent ribonucleotide reductase -
  OH768_RS14520 (OH768_14495) nrdR 3267221..3267772 (-) 552 WP_019072899.1 transcriptional regulator NrdR -
  OH768_RS14525 (OH768_14500) dinR/lexA 3268338..3269117 (+) 780 WP_026151025.1 transcriptional repressor LexA Regulator
  OH768_RS14530 (OH768_14505) - 3269300..3271288 (-) 1989 WP_406453706.1 ATP-dependent DNA helicase -
  OH768_RS14535 (OH768_14510) - 3271492..3272226 (-) 735 WP_406453707.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28037.72 Da        Isoelectric Point: 7.0668

>NTDB_id=673187 OH768_RS14525 WP_026151025.1 3268338..3269117(+) (dinR/lexA) [Streptomyces sp. NBC_01622]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=673187 OH768_RS14525 WP_026151025.1 3268338..3269117(+) (dinR/lexA) [Streptomyces sp. NBC_01622]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGATCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCAATGAA
CGAAGCCGCGAATCCCGAGGGACACAAGCGCTCCCTGCCGGGCCGACCTCCCGGCATCCGGGCGGACAGCTCGGGGCTCA
CGGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCGGTGCAGCGACGGGGCTACCCGCCGTCGATGCGCGAGATC
GGGCAGGCAGTCGGCCTGTCCAGCACATCCTCGGTCGCACACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCCGCGGCTCCGACCAGTCCTCGTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCGGCCGCGTCGTACGTCCCGCTGGTGGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCGCTCCCCCGCCAACTGGTCGGTGACGGGGAGCTGTTCGTCCTCAAGGTTGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTACGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTCGCCGCCATGCTGG
AGGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACTCCGCGTACGAGCCG
ATCCCCGGCGACGACGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375