Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MUA36_RS12030 Genome accession   NZ_CP094815
Coordinates   2373082..2374053 (-) Length   323 a.a.
NCBI ID   WP_279382201.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6255     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2374746..2405033 2373082..2374053 flank 693


Gene organization within MGE regions


Location: 2373082..2405033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA36_RS12030 (MUA36_12010) ceuB 2373082..2374053 (-) 972 WP_279382201.1 ABC transporter permease Machinery gene
  MUA36_RS12035 (MUA36_12015) - 2374180..2374596 (-) 417 WP_025905416.1 FixH family protein -
  MUA36_RS12040 (MUA36_12020) nrdF 2374746..2375717 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MUA36_RS12045 (MUA36_12025) nrdE 2375746..2377851 (-) 2106 WP_049319721.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MUA36_RS12050 (MUA36_12030) nrdI 2377814..2378212 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MUA36_RS12055 (MUA36_12035) - 2378588..2379472 (+) 885 WP_262637063.1 DMT family transporter -
  MUA36_RS12060 (MUA36_12040) queF 2379472..2379972 (+) 501 WP_048539940.1 preQ(1) synthase -
  MUA36_RS12065 (MUA36_12045) - 2380269..2381783 (+) 1515 WP_164960807.1 peptide MFS transporter -
  MUA36_RS12070 (MUA36_12050) - 2382338..2383840 (+) 1503 WP_206180438.1 peptide MFS transporter -
  MUA36_RS12075 (MUA36_12055) - 2383880..2384461 (-) 582 WP_048539943.1 5'-3'-deoxyribonucleotidase -
  MUA36_RS12080 (MUA36_12060) hisC 2384526..2385593 (-) 1068 WP_058591625.1 histidinol-phosphate transaminase -
  MUA36_RS12085 (MUA36_12065) - 2385696..2387210 (-) 1515 WP_049319717.1 ABC transporter permease/substrate-binding protein -
  MUA36_RS12090 (MUA36_12070) - 2387207..2388169 (-) 963 WP_164960810.1 ABC transporter ATP-binding protein -
  MUA36_RS12095 (MUA36_12075) recQ 2388259..2390037 (-) 1779 WP_049319715.1 DNA helicase RecQ -
  MUA36_RS12100 (MUA36_12080) - 2390060..2391931 (-) 1872 WP_049319714.1 ABC-F family ATP-binding cassette domain-containing protein -
  MUA36_RS12105 (MUA36_12085) - 2392017..2392832 (+) 816 WP_049319713.1 ZIP family metal transporter -
  MUA36_RS12110 (MUA36_12090) ltaS 2393546..2395486 (-) 1941 WP_049319712.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  MUA36_RS12115 (MUA36_12095) - 2395687..2396691 (-) 1005 WP_049319711.1 biotin-dependent carboxyltransferase family protein -
  MUA36_RS12120 (MUA36_12100) - 2396682..2397383 (-) 702 WP_049319710.1 carboxyltransferase domain-containing protein -
  MUA36_RS12125 (MUA36_12105) - 2397424..2397636 (-) 213 WP_049319709.1 hypothetical protein -
  MUA36_RS12130 (MUA36_12110) - 2397698..2399446 (-) 1749 WP_243506729.1 chorismate-binding protein -
  MUA36_RS12135 (MUA36_12115) - 2399424..2400026 (-) 603 WP_243506734.1 aminodeoxychorismate/anthranilate synthase component II -
  MUA36_RS12140 (MUA36_12120) queC 2400230..2400898 (+) 669 WP_025904757.1 7-cyano-7-deazaguanine synthase QueC -
  MUA36_RS12145 (MUA36_12125) queD 2400898..2401329 (+) 432 WP_049319706.1 6-carboxytetrahydropterin synthase QueD -
  MUA36_RS12150 (MUA36_12130) queE 2401322..2402032 (+) 711 WP_049319705.1 7-carboxy-7-deazaguanine synthase QueE -
  MUA36_RS12155 (MUA36_12135) - 2402129..2402797 (-) 669 WP_049319704.1 DUF1129 family protein -
  MUA36_RS12160 (MUA36_12140) - 2402790..2403128 (-) 339 WP_025904753.1 PadR family transcriptional regulator -
  MUA36_RS12165 (MUA36_12145) - 2403314..2403955 (+) 642 WP_164960814.1 hypothetical protein -
  MUA36_RS12170 (MUA36_12150) - 2404007..2404255 (+) 249 WP_025904751.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  MUA36_RS12175 (MUA36_12155) - 2404311..2405033 (-) 723 WP_243506737.1 YwiC-like family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35471.95 Da        Isoelectric Point: 10.5947

>NTDB_id=673177 MUA36_RS12030 WP_279382201.1 2373082..2374053(-) (ceuB) [Mammaliicoccus sciuri strain IVB6255]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILHRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTIGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=673177 MUA36_RS12030 WP_279382201.1 2373082..2374053(-) (ceuB) [Mammaliicoccus sciuri strain IVB6255]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCATAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAATTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCACATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.473

98.142

0.495