Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB56_RS30800 Genome accession   NZ_CP109277
Coordinates   6638186..6638965 (-) Length   259 a.a.
NCBI ID   WP_326755069.1    Uniprot ID   A0ABZ1GVT0
Organism   Streptomyces sp. NBC_01635     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6633186..6643965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS30790 (OHB56_30755) - 6634583..6635797 (+) 1215 WP_406356773.1 TolB family protein -
  OHB56_RS30795 (OHB56_30760) - 6635980..6637986 (+) 2007 WP_406356775.1 ATP-dependent DNA helicase -
  OHB56_RS30800 (OHB56_30765) dinR/lexA 6638186..6638965 (-) 780 WP_326755069.1 transcriptional repressor LexA Regulator
  OHB56_RS30805 (OHB56_30770) nrdR 6639690..6640247 (+) 558 WP_326755070.1 transcriptional regulator NrdR -
  OHB56_RS30810 (OHB56_30775) - 6640410..6643307 (+) 2898 WP_406356777.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27992.72 Da        Isoelectric Point: 7.0666

>NTDB_id=673138 OHB56_RS30800 WP_326755069.1 6638186..6638965(-) (dinR/lexA) [Streptomyces sp. NBC_01635]
MTTTADSASITAQDRSQGRLEPVHAMSEATHPEGQKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHIWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=673138 OHB56_RS30800 WP_326755069.1 6638186..6638965(-) (dinR/lexA) [Streptomyces sp. NBC_01635]
GTGACCACCACCGCAGACAGCGCCAGCATCACTGCCCAGGACCGCTCCCAGGGCCGGCTCGAGCCGGTGCATGCGATGAG
CGAAGCCACGCATCCCGAGGGCCAAAAGCGCTCCTTGCCGGGCCGACCTCCCGGCATCCGGGCGGACAGCTCGGGACTCA
CCGACCGCCAGCGTCGGGTGATCGAGGTCATCAGGGATTCGGTGCAGCGACGCGGGTACCCGCCGTCGATGCGCGAGATC
GGCCAGGCGGTCGGCCTCTCCAGCACCTCCTCGGTGGCACACCAGTTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGTCCCCGCGCGTACGAGGTGCGCGGCTCCGACCAGGCCGCCTCCGTGCAGCCCACCGACACCGCGGGCA
AGCCGGCCGCGTCGTACGTGCCGCTGGTCGGCCGTATCGCCGCAGGCGGCCCCATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCTCTCCCCCGTCAGCTCGTCGGTGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTCCATGATCGAGGC
TGCGATCTGTGACGGCGACTGGGTCACGGTCCGGCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATATCTGGCTCCTCCCGCACAACGCGGCCTACGAGCCG
ATCCCCGGCGACGACGCGACCATTCTGGGCAAGGTGGTGGCCGTTCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378