Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA52_RS04080 Genome accession   NZ_CP094814
Coordinates   872349..873071 (-) Length   240 a.a.
NCBI ID   WP_037567007.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6175     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 867349..878071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA52_RS04060 (MUA52_04055) - 868286..868921 (+) 636 WP_037567012.1 redox-sensing transcriptional repressor Rex -
  MUA52_RS04065 (MUA52_04060) - 869104..870189 (+) 1086 WP_262619162.1 YeeE/YedE family protein -
  MUA52_RS04070 (MUA52_04065) - 870212..870436 (+) 225 WP_262619163.1 sulfurtransferase TusA family protein -
  MUA52_RS04075 (MUA52_04070) - 870792..872282 (+) 1491 WP_262619164.1 sucrose-6-phosphate hydrolase -
  MUA52_RS04080 (MUA52_04075) agrA 872349..873071 (-) 723 WP_037567007.1 quorum-sensing response regulator AgrA Regulator
  MUA52_RS04085 (MUA52_04080) agrC 873085..874383 (-) 1299 WP_394371402.1 quorum-sensing sensor histidine kinase AgrC -
  MUA52_RS04090 (MUA52_04085) agrD 874412..874546 (-) 135 WP_060551490.1 cyclic lactone autoinducer peptide AgrD -
  MUA52_RS04095 (MUA52_04090) - 874549..875112 (-) 564 WP_262619166.1 accessory gene regulator AgrB -
  MUA52_RS04100 (MUA52_04095) - 875760..876557 (-) 798 WP_262619167.1 carbon-nitrogen family hydrolase -
  MUA52_RS04105 (MUA52_04100) - 876728..877789 (+) 1062 WP_262619168.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28242.39 Da        Isoelectric Point: 5.4121

>NTDB_id=673129 MUA52_RS04080 WP_037567007.1 872349..873071(-) (agrA) [Staphylococcus agnetis strain IVB6175]
MKILICEDDPKQRERMESIIQNYIMIEEKPMEIEISTSDPYALLEASKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDIDELRTRIIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDSRFFRCHNSFVLNRHNITHVDAKERIVYFKNDEFCYVSVRNIKKIKK

Nucleotide


Download         Length: 723 bp        

>NTDB_id=673129 MUA52_RS04080 WP_037567007.1 872349..873071(-) (agrA) [Staphylococcus agnetis strain IVB6175]
TTGAAAATTTTAATTTGTGAGGATGACCCTAAACAAAGAGAACGAATGGAATCCATCATTCAGAATTACATTATGATTGA
AGAAAAGCCTATGGAAATTGAAATTTCTACTAGTGACCCCTATGCGTTACTTGAGGCATCCAAAAATATGACTGATATTG
GTTGTTATTTTTTAGACATCCAATTGGAATCAGATATTAATGGTATTAAGCTTGGTAGCGAAATTCGAAAACATGATCCT
GTAGGTAATATTATTTTTGTAACCAGTCATAGTGAATTAACCTATTTAACTTTTGTGTATAAACTTGCAGCAATGGATTT
TATTTTTAAAGATGACATTGATGAGTTACGTACGAGAATTATTGATTGTCTCGAAACAGCACTTAAGCGGTTAGATTTAT
TAACAAAAGATAACACAGTAGAAACAATGGAATTAAAACAAGGCAGTAATTCTGTCTATGTTAACTATGATGATGTTATG
TTTTTTGAATCTTCACCTAAGTCACATCGTTTGATTGCACATTTAGATAATCGGCAAATTGAATTTTATGGTAATTTAAG
AGAGCTCGCACAAATTGATAGTCGTTTTTTTAGATGTCATAATAGTTTTGTGTTAAATCGACATAACATTACACATGTTG
ATGCTAAAGAGCGCATTGTTTATTTTAAAAATGATGAATTTTGCTATGTGTCTGTAAGAAATATAAAAAAAATAAAGAAA
TAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813