Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA84_RS11060 Genome accession   NZ_CP094813
Coordinates   2241996..2243366 (-) Length   456 a.a.
NCBI ID   WP_262618254.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6177     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2236996..2248366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA84_RS11035 (MUA84_11030) cysE 2237252..2237878 (-) 627 WP_168429109.1 serine O-acetyltransferase -
  MUA84_RS11040 (MUA84_11035) gltX 2238209..2239663 (-) 1455 WP_262618252.1 glutamate--tRNA ligase -
  MUA84_RS11045 (MUA84_11040) ispF 2239752..2240228 (-) 477 WP_107390606.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA84_RS11050 (MUA84_11045) ispD 2240221..2240916 (-) 696 WP_107390607.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA84_RS11055 (MUA84_11050) - 2240919..2241980 (-) 1062 WP_105994879.1 PIN/TRAM domain-containing protein -
  MUA84_RS11060 (MUA84_11055) radA 2241996..2243366 (-) 1371 WP_262618254.1 DNA repair protein RadA Machinery gene
  MUA84_RS11065 (MUA84_11060) - 2243568..2246030 (-) 2463 WP_105994877.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA84_RS11070 (MUA84_11065) - 2246043..2247047 (-) 1005 WP_037566297.1 protein arginine kinase -
  MUA84_RS11075 (MUA84_11070) - 2247040..2247558 (-) 519 WP_394371389.1 UvrB/UvrC motif-containing protein -
  MUA84_RS11080 (MUA84_11075) - 2247570..2248031 (-) 462 WP_037566295.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50068.64 Da        Isoelectric Point: 8.0159

>NTDB_id=673119 MUA84_RS11060 WP_262618254.1 2241996..2243366(-) (radA) [Staphylococcus agnetis strain IVB6177]
MAKKKITFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRAQKTHAKVQTLNEIKNEQTPRILTKSDEFNR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKTKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHDAV
KKVEPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
AHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIIIATASSFKDQAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVSSTNEALKHALKQR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=673119 MUA84_RS11060 WP_262618254.1 2241996..2243366(-) (radA) [Staphylococcus agnetis strain IVB6177]
GTGGCCAAAAAAAAGATTACATTTGAGTGTACTGCATGCGGATACCAGTCTCCAAAATGGATGGGGAAATGCCCAAATTG
CGGTGCATGGAATTCAATGGAAGAATCATTGGAACAAAAAACAGCTCACCCTAAACATGGCGTGCGTGCGCAAAAAACAC
ATGCAAAAGTGCAAACATTAAATGAAATTAAAAATGAACAGACACCACGTATTCTTACTAAAAGTGATGAATTTAACCGT
GTGCTTGGAGGCGGAATAGTTCAAGGTTCTCTCGTACTCATCGGGGGCGATCCAGGTATCGGTAAATCAACACTCCTCCT
TCAAATGTGTGCTGCGTTATCTAAAACTAAGAAAGTACTTTATATTACCGGTGAAGAATCGCTAAATCAAACGAAGCTAC
GCGCCGACCGTTTAGATGAAGATGCTAGTGCACTCAATGTGTTTGCAGAAACGGATCTTGAAGTCATTCATGATGCAGTA
AAAAAAGTGGAACCTGAGTTAATCGTTGTAGATTCCATTCAAACCATTTATCACCCAGAAATCAGTTCTGCACCGGGGTC
AGTATCTCAAGTGAGAGAGAGTACACAAAGCCTCATGCATATTGCCAAACAAATGAATATCGCTACATTTATCGTTGGAC
ACGTTACGAAAGAAGGGCAAATTGCGGGTCCTCGATTGTTAGAACATATGGTGGATACTGTGCTCTATTTTGAAGGCGAT
GCACATCATGCATATCGCATTTTGCGTGCGGTGAAGAACCGGTTTGGTTCTACAAATGAAATGGGAATATTTGAAATGAA
ACAATCGGGTTTAAAAAGTGTGCCGAATCCGTCTGAAATGTTTTTAGAAGAACGCTCTACAAATGTACCAGGTTCTACGA
TTGTGGCAACAATGGAAGGAACCCGTCCGTTACTGATTGAAGTGCAAGCTTTAGTCACACCAACAACTTTTAACAATCCT
AGACGAATGGCTACAGGTATCGATCATAATCGCCTAAGTTTGTTAATGGCTGTTTTAGAGAAAAAAGAAGGGTATTTACT
CCAACAACAAGATGCATATATTAAAGTAGCAGGTGGTGTCAAATTAAGTGAACCTGCTGTTGATTTAGGTATCATCATTG
CGACAGCTTCAAGTTTTAAAGATCAAGCTGTTGATGGATTAGATTGTTTTATAGGTGAAGTAGGTTTAACCGGGGAAGTG
CGCAGAGTCTCCCGTATTGAACAAAGGGTTCAAGAAGCGGCGAAGTTGGGATTCAAACGCGTCATTATTCCGAAAACCAA
TATCGGTGGGTGGACATTCCCAGAAAATATAGAAGTAATCGGTGTGTCTTCAACAAATGAAGCATTAAAGCATGCCTTAA
AACAAAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-219)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.304

100

0.669
  radA Streptococcus pneumoniae Rx1

59.251

99.561

0.59
  radA Streptococcus pneumoniae D39

59.251

99.561

0.59
  radA Streptococcus pneumoniae R6

59.251

99.561

0.59
  radA Streptococcus pneumoniae TIGR4

59.251

99.561

0.59
  radA Streptococcus mitis NCTC 12261

59.251

99.561

0.59
  radA Streptococcus mitis SK321

59.251

99.561

0.59