Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OHB56_RS23780 | Genome accession | NZ_CP109277 |
| Coordinates | 5092562..5095087 (+) | Length | 841 a.a. |
| NCBI ID | WP_326754054.1 | Uniprot ID | A0ABZ1GSJ6 |
| Organism | Streptomyces sp. NBC_01635 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5087562..5100087
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHB56_RS23750 (OHB56_23700) | - | 5088604..5089275 (+) | 672 | WP_406359201.1 | hypothetical protein | - |
| OHB56_RS23755 (OHB56_23705) | - | 5089377..5089556 (+) | 180 | WP_326754050.1 | hypothetical protein | - |
| OHB56_RS23760 (OHB56_23710) | - | 5089708..5090217 (+) | 510 | WP_326754051.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| OHB56_RS23765 (OHB56_23715) | - | 5090227..5090760 (+) | 534 | WP_055595396.1 | amino-acid N-acetyltransferase | - |
| OHB56_RS23770 (OHB56_23720) | - | 5091045..5091380 (+) | 336 | WP_326754052.1 | Lsr2 family protein | - |
| OHB56_RS23775 (OHB56_23725) | - | 5091359..5092132 (-) | 774 | WP_406355538.1 | SCO3374 family protein | - |
| OHB56_RS23780 (OHB56_23730) | clpC | 5092562..5095087 (+) | 2526 | WP_326754054.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OHB56_RS23785 (OHB56_23735) | - | 5095172..5095822 (-) | 651 | WP_326754055.1 | HAD family acid phosphatase | - |
| OHB56_RS23790 (OHB56_23740) | - | 5096268..5096966 (+) | 699 | WP_326754056.1 | M23 family metallopeptidase | - |
| OHB56_RS23795 (OHB56_23745) | - | 5097019..5098545 (-) | 1527 | WP_406359202.1 | ATP-binding protein | - |
| OHB56_RS23800 (OHB56_23750) | cseB | 5098542..5099240 (-) | 699 | WP_406355541.1 | two-component system response regulator CseB | - |
Sequence
Protein
Download Length: 841 a.a. Molecular weight: 93034.28 Da Isoelectric Point: 5.7504
>NTDB_id=673115 OHB56_RS23780 WP_326754054.1 5092562..5095087(+) (clpC) [Streptomyces sp. NBC_01635]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETAAAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGDLI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDKKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLS
QEDILEIVDLMIEKVDERLKDRDMGIELSQPAKELLSKRGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVD
IEGEGESAIFTFRGEEKSALPDVPPIEQAAGGAGPNLSKDV
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETAAAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGDLI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDKKSNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLS
QEDILEIVDLMIEKVDERLKDRDMGIELSQPAKELLSKRGYDPVLGARPLRRTIQREIEDSLSEKILFGELRPGHIVVVD
IEGEGESAIFTFRGEEKSALPDVPPIEQAAGGAGPNLSKDV
Nucleotide
Download Length: 2526 bp
>NTDB_id=673115 OHB56_RS23780 WP_326754054.1 5092562..5095087(+) (clpC) [Streptomyces sp. NBC_01635]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATTCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGTCAGCAGGTGGAGGAGATCATCGGGCAGGGCCAGCAGGCCCCGTCGGGTCACATCCCCTTC
ACTCCCCGTGCCAAGAAGGTGCTCGAGCTGTCGCTCCGCGAGGCGCTGCAGCTGGGTCACAACTACATCGGTACGGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCAGATCTGAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCGCCGCCGGCGGTCCTGCCGAGGGCACC
CCCTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCTG
CCGAGGGCGCCATCGACGCGGCCTCCATCCTGAAGCCGATGCTGGCTCGCGGTGAGCTGCAGACCATCGGCGCGACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGTTTCCAGCCGATCCAGGTCGCCGAGCCGTC
CCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGGTACGAGGCGCACCACCGTGTCTCGATCACCGACGAGG
CGCTGGTGCAGGCCGCCACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTCCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGCTCGCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGGTGT
CCGCCGGGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGTGACAAGGAGAAGCAGCTCC
TCGCCGCCAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGACCTGATC
GCCGAGGTCCTCGCCACGGCCACCGGCATCCCGGTCTTCAAGCTGACCGAGGAGGAGTCCTCGCGTCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTGTCGAAGGCGATCCGCCGTACGCGTGCCG
GTCTGAAGGACCCGAAGCGTCCCGGTGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCCAAG
GCCCTCGCCGAGTTCCTGTTCGGTGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGTCAGCTGACGGAGAAGGTGCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCGCGGGCGACAAGAAGAGCAACTACGAGCGTATGAAGAACAAGG
TGTCGGACGAGCTCAAGCAGCACTTCCGTCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTGTTCCCGCAGCTGTCC
CAGGAGGACATCCTCGAGATCGTCGACCTGATGATCGAGAAGGTGGACGAGCGCCTGAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGCCCGCGAAGGAGCTGCTGTCCAAGAGGGGCTACGACCCCGTGCTGGGCGCCCGGCCGCTGCGCCGGACCA
TCCAGCGCGAGATCGAGGACTCGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGCCACATCGTGGTCGTGGAC
ATCGAGGGCGAGGGCGAGAGCGCGATCTTCACCTTCCGTGGTGAGGAGAAGTCGGCCCTGCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGCGGAGCCGGACCGAACCTCAGCAAGGACGTGTAA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATTCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGTCAGCAGGTGGAGGAGATCATCGGGCAGGGCCAGCAGGCCCCGTCGGGTCACATCCCCTTC
ACTCCCCGTGCCAAGAAGGTGCTCGAGCTGTCGCTCCGCGAGGCGCTGCAGCTGGGTCACAACTACATCGGTACGGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCAGATCTGAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCGCCGCCGGCGGTCCTGCCGAGGGCACC
CCCTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGCACCAAGAACAACCCGGTGCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGCTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCTG
CCGAGGGCGCCATCGACGCGGCCTCCATCCTGAAGCCGATGCTGGCTCGCGGTGAGCTGCAGACCATCGGCGCGACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGTTTCCAGCCGATCCAGGTCGCCGAGCCGTC
CCTGCCGCACACCATCGAGATCCTCAAGGGTCTGCGCGACCGGTACGAGGCGCACCACCGTGTCTCGATCACCGACGAGG
CGCTGGTGCAGGCCGCCACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTCCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGCTCGCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTGCGCGAGTTCGACGAGAAGATCGCCGGTGT
CCGCCGGGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGTGACAAGGAGAAGCAGCTCC
TCGCCGCCAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGACCTGATC
GCCGAGGTCCTCGCCACGGCCACCGGCATCCCGGTCTTCAAGCTGACCGAGGAGGAGTCCTCGCGTCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTGTCGAAGGCGATCCGCCGTACGCGTGCCG
GTCTGAAGGACCCGAAGCGTCCCGGTGGTTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACCGAGCTGTCCAAG
GCCCTCGCCGAGTTCCTGTTCGGTGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGTCAGCTGACGGAGAAGGTGCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATCTTCAACTCGCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTGGGCTTCGCCGCCGCGGGCGACAAGAAGAGCAACTACGAGCGTATGAAGAACAAGG
TGTCGGACGAGCTCAAGCAGCACTTCCGTCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTGTTCCCGCAGCTGTCC
CAGGAGGACATCCTCGAGATCGTCGACCTGATGATCGAGAAGGTGGACGAGCGCCTGAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGCCCGCGAAGGAGCTGCTGTCCAAGAGGGGCTACGACCCCGTGCTGGGCGCCCGGCCGCTGCGCCGGACCA
TCCAGCGCGAGATCGAGGACTCGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGCCCCGGCCACATCGTGGTCGTGGAC
ATCGAGGGCGAGGGCGAGAGCGCGATCTTCACCTTCCGTGGTGAGGAGAAGTCGGCCCTGCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGCGGAGCCGGACCGAACCTCAGCAAGGACGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.529 |
96.433 |
0.593 |
| clpC | Streptococcus mutans UA159 |
44.217 |
98.692 |
0.436 |
| clpC | Streptococcus thermophilus LMD-9 |
43.289 |
98.335 |
0.426 |
| clpC | Streptococcus pneumoniae Rx1 |
44.114 |
95.957 |
0.423 |
| clpC | Streptococcus pneumoniae D39 |
44.114 |
95.957 |
0.423 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.866 |
95.957 |
0.421 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.58 |
96.314 |
0.42 |
| clpE | Streptococcus mutans UA159 |
53.994 |
74.435 |
0.402 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
53.387 |
73.722 |
0.394 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.97 |
74.078 |
0.392 |
| clpE | Streptococcus pneumoniae Rx1 |
52.809 |
74.078 |
0.391 |
| clpE | Streptococcus pneumoniae D39 |
52.809 |
74.078 |
0.391 |
| clpE | Streptococcus pneumoniae R6 |
52.809 |
74.078 |
0.391 |
| clpC | Streptococcus thermophilus LMG 18311 |
50.551 |
75.505 |
0.382 |