Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB56_RS14180 Genome accession   NZ_CP109277
Coordinates   3007379..3009307 (+) Length   642 a.a.
NCBI ID   WP_406353609.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01635     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3002379..3014307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS14165 (OHB56_14110) - 3003595..3003900 (+) 306 WP_326752601.1 YtxH domain-containing protein -
  OHB56_RS14170 (OHB56_14115) - 3003985..3005439 (+) 1455 WP_406353607.1 FGGY family carbohydrate kinase -
  OHB56_RS14175 (OHB56_14120) rcrP 3005646..3007379 (+) 1734 WP_326752603.1 ABC transporter ATP-binding protein Regulator
  OHB56_RS14180 (OHB56_14125) rcrQ 3007379..3009307 (+) 1929 WP_406353609.1 ABC transporter ATP-binding protein Regulator
  OHB56_RS14185 (OHB56_14130) - 3009399..3010292 (-) 894 WP_406353610.1 class I SAM-dependent methyltransferase -
  OHB56_RS14190 (OHB56_14135) - 3010420..3011022 (-) 603 WP_326752606.1 XRE family transcriptional regulator -
  OHB56_RS14195 (OHB56_14140) - 3011173..3011742 (+) 570 Protein_2817 MFS transporter -
  OHB56_RS14200 (OHB56_14145) - 3011870..3013243 (-) 1374 Protein_2818 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69378.61 Da        Isoelectric Point: 6.0517

>NTDB_id=673097 OHB56_RS14180 WP_406353609.1 3007379..3009307(+) (rcrQ) [Streptomyces sp. NBC_01635]
MAGAMARAGAGTGPDHQSLHFKESGRRLIARFGPERLTIYGLLACVVLSVGLSVIGPKILGRATDLVFAGIVGRDMPAGA
TKEQVLESMRERGEGGVADMLRSTDFTPGEGIDFTAVGNVLLFALAVFVAAGLLMAVATRLVNGAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNLGQTLQQTMGQLINSLLTVIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGTLNAHIEEMYTGHTLVKVFGRQEESAKRFAEENGALYEAGFKAQFNSGVMQPLMLFVSNLNYVLVA
VIGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDADEQSADVSPAEKPAELRGRVALE
RVSFRYSPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKGMAELAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGSHEKLLAAGGAYARLYRAQFAQAAVE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=673097 OHB56_RS14180 WP_406353609.1 3007379..3009307(+) (rcrQ) [Streptomyces sp. NBC_01635]
ATGGCCGGGGCCATGGCGCGGGCCGGGGCCGGGACGGGCCCCGACCACCAGTCGCTGCATTTCAAGGAGTCGGGCAGACG
GCTCATCGCGCGGTTCGGGCCGGAACGCCTGACCATCTACGGGCTGCTGGCCTGCGTGGTGCTGAGCGTGGGGCTCAGCG
TGATCGGGCCGAAGATCCTCGGCCGGGCGACCGACCTGGTCTTCGCGGGCATCGTCGGACGGGACATGCCGGCCGGGGCC
ACCAAGGAGCAGGTGCTGGAGTCGATGCGGGAGCGCGGCGAGGGCGGTGTCGCGGACATGCTCCGCAGCACCGACTTCAC
GCCGGGCGAGGGCATCGACTTCACGGCCGTGGGCAACGTCCTGCTGTTCGCGCTGGCGGTGTTCGTGGCCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACGGGGCCGTGAACCGCACCATGTACCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACATCGACAA
CCTCGGGCAGACGCTCCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCGTCATCGGGGTGCTGGCGATGATGT
TCTACGTGTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTGGTCGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACGACGGGCACGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGACGGCAGGAGGAGTCGGCGAAGCGGTTCGCCGAGGAGAACGGGGCGCTGTACGAGGCCG
GTTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGCTCTTCGTGTCGAACCTCAACTATGTGCTGGTGGCG
GTCATCGGCGGGCTGCGGGTCGCGTCGGGTTCGCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGGTCTTTGAGC
TACTCGACGCCGACGAGCAGTCGGCCGACGTCTCGCCGGCCGAGAAGCCGGCCGAGCTGCGCGGGCGGGTGGCGCTGGAG
CGGGTGTCGTTCCGGTACTCCCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTCACGGTGGAGCCGGGGCACACGGTCGC
GATCGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGCA
TCACGCTCGACGGCGTCGACATAGCGCGCATGTCCCGGGACGAACTGCGGGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCGCGGAAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCCGACCGGTTCGTCCGCACCCTGCCGGACGGGTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGGGATGGCCGAACTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTCGAGCAGG
GTTCCCACGAGAAGCTGCTGGCGGCGGGCGGAGCCTACGCCCGCCTGTACCGTGCGCAGTTCGCGCAGGCGGCGGTGGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.234

93.302

0.375