Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB56_RS14175 Genome accession   NZ_CP109277
Coordinates   3005646..3007379 (+) Length   577 a.a.
NCBI ID   WP_326752603.1    Uniprot ID   A0ABZ1GKJ9
Organism   Streptomyces sp. NBC_01635     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000646..3012379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS14140 (OHB56_14085) - 3001682..3001969 (+) 288 Protein_2809 PfkB family carbohydrate kinase -
  OHB56_RS14145 (OHB56_14090) - 3002109..3002234 (-) 126 WP_267893674.1 hypothetical protein -
  OHB56_RS14165 (OHB56_14110) - 3003595..3003900 (+) 306 WP_326752601.1 YtxH domain-containing protein -
  OHB56_RS14170 (OHB56_14115) - 3003985..3005439 (+) 1455 WP_406353607.1 FGGY family carbohydrate kinase -
  OHB56_RS14175 (OHB56_14120) rcrP 3005646..3007379 (+) 1734 WP_326752603.1 ABC transporter ATP-binding protein Regulator
  OHB56_RS14180 (OHB56_14125) rcrQ 3007379..3009307 (+) 1929 WP_406353609.1 ABC transporter ATP-binding protein Regulator
  OHB56_RS14185 (OHB56_14130) - 3009399..3010292 (-) 894 WP_406353610.1 class I SAM-dependent methyltransferase -
  OHB56_RS14190 (OHB56_14135) - 3010420..3011022 (-) 603 WP_326752606.1 XRE family transcriptional regulator -
  OHB56_RS14195 (OHB56_14140) - 3011173..3011742 (+) 570 Protein_2817 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62212.29 Da        Isoelectric Point: 5.8839

>NTDB_id=673096 OHB56_RS14175 WP_326752603.1 3005646..3007379(+) (rcrP) [Streptomyces sp. NBC_01635]
MLIRLLRTHLRPYKRPIVLLVLLQFLQTCATLYLPTLNAGIIDDGVVKGDTGYILSYGALMIGISLAQVVCNVGAVYYGA
RTAAAVGRDLRGAVFERVQSFSAREVGHFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCLGGIVLALGLDVPLSGV
LVGVVPVLGVSVTLIVRRLRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDAYEQRRFGKANAELTDVALGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PVAPVTELPRHGHLEIRGGGFRFPGAEEPVLKSVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVPVA
DLDPALLARTVGMVPQKPYLFAGTVATNLRYGHPDATDDALWHALEVAQAREFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALAEETAEATVVIVAQRVATIRDADRIVVLDEGRVAGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=673096 OHB56_RS14175 WP_326752603.1 3005646..3007379(+) (rcrP) [Streptomyces sp. NBC_01635]
GTGCTGATACGACTGCTGCGGACTCATCTGAGGCCGTACAAAAGACCCATCGTCCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTATCTGCCCACCCTCAACGCCGGCATCATCGACGACGGTGTCGTCAAGGGGGACACCGGCTACA
TCCTGTCCTACGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACGTCGGTGCCGTGTACTACGGCGCC
CGGACCGCGGCGGCGGTGGGGCGGGACCTGCGGGGGGCCGTCTTCGAGCGGGTGCAGTCCTTCTCCGCGCGTGAGGTAGG
CCACTTCGGCGCCCCCTCGCTCATCACCCGTACGACGAACGACGTCCAGCAGATCCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGTCTGGGCGGCATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGGGGTGGTGCCGGTGCTGGGTGTCTCGGTGACACTGATCGTGCGGCGGCTGCGTCCGCTGTTCCGGAGCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
CGTACGAGCAGCGGCGGTTCGGGAAGGCGAACGCCGAGCTGACCGACGTGGCGCTGGGCACCGGCAATCTGCTGGCGCTG
ATGTTCCCCGTGGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
GGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTTCCGCGGGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGACACCTCCTCCAGCGTCGTGCCG
CCCGTCGCGCCCGTCACCGAGCTGCCCCGGCACGGCCATCTGGAGATCCGGGGCGGCGGCTTCCGCTTCCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCGGTCGACCTGGTGGCCCGCCCGGGCGAGGTCACCGCCGTCATCGGTTCGACCGGCAGCGGCA
AGTCGACGCTGCTCGGACTGGTCCCCCGGCTGTTCGACGCGACCGAGGGCGAGGTCCTCGTGGACGGCGTGCCCGTCGCG
GACCTCGATCCGGCGCTGCTCGCGAGGACGGTCGGGATGGTGCCGCAGAAGCCGTACCTGTTCGCGGGGACGGTGGCGAC
GAATCTGCGGTACGGGCATCCGGACGCCACGGACGACGCGTTGTGGCACGCGTTGGAGGTGGCGCAGGCCAGGGAGTTCG
TCGAGCGGCTGGAGGGCGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAACGTGTCCGGCGGCCAGCGCCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCGACCGA
CGCGGCGCTGCGCGGGGCGCTGGCCGAGGAGACCGCCGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTGGACGAGGGCCGGGTCGCCGGCACCGGCCGGCATCACGAGCTGATGGCTGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.243

100

0.395