Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB03_RS44165 Genome accession   NZ_CP109266
Coordinates   9765635..9766321 (+) Length   228 a.a.
NCBI ID   WP_406408731.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01643     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9760635..9771321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB03_RS44150 (OHB03_44250) - 9763112..9763339 (+) 228 WP_355229221.1 hypothetical protein -
  OHB03_RS44155 - 9763396..9763650 (-) 255 Protein_8737 Tn3 family transposase -
  OHB03_RS44160 (OHB03_44260) - 9764423..9764812 (-) 390 WP_406408729.1 hypothetical protein -
  OHB03_RS44165 (OHB03_44265) dinR/lexA 9765635..9766321 (+) 687 WP_406408731.1 transcriptional repressor LexA Regulator
  OHB03_RS44170 (OHB03_44270) - 9766673..9767785 (-) 1113 WP_406408733.1 IS110 family transposase -
  OHB03_RS44175 (OHB03_44275) - 9768113..9768613 (+) 501 WP_330248547.1 hypothetical protein -
  OHB03_RS44180 (OHB03_44280) - 9768579..9769361 (-) 783 WP_406408735.1 IS5 family transposase -
  OHB03_RS44185 (OHB03_44285) - 9769660..9770244 (-) 585 WP_406408737.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24658.51 Da        Isoelectric Point: 8.9007

>NTDB_id=672996 OHB03_RS44165 WP_406408731.1 9765635..9766321(+) (dinR/lexA) [Streptomyces sp. NBC_01643]
MPTVESAGRPGRPPGTRVNSEGLTERQAAIVNFIEREVARKGYPPSMREIGQAVKLTSTSSVSHQMAALEKKGLLYRDPH
RPRAYRVHTRWTDKFPEAPTAPAPAMALVPLVGRIAAGAPILAEETVEDMLPLPRQLVGEGRLFALKVVGDSMIEAAICD
GDIVIIRQMGSADHGDIVAALLDGEATVKRLRREDGRVWLVPHNPAYQPIAGDDATILGKVVAVLRTL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=672996 OHB03_RS44165 WP_406408731.1 9765635..9766321(+) (dinR/lexA) [Streptomyces sp. NBC_01643]
ATGCCCACCGTCGAATCCGCAGGCCGGCCCGGGCGGCCACCCGGCACCCGTGTCAACTCTGAAGGACTCACGGAGCGCCA
GGCGGCTATCGTCAATTTCATCGAACGTGAGGTCGCCCGCAAGGGCTACCCACCGTCGATGCGGGAGATCGGCCAGGCTG
TCAAGCTCACTAGCACATCCTCCGTCTCGCACCAGATGGCGGCCCTCGAAAAAAAAGGCCTGCTCTACCGCGATCCACAT
CGGCCTCGCGCCTACCGCGTCCACACCCGCTGGACCGACAAGTTCCCCGAGGCTCCGACGGCCCCCGCGCCGGCCATGGC
CCTTGTTCCCCTGGTCGGCAGAATTGCCGCCGGTGCGCCGATCCTGGCCGAAGAAACAGTGGAGGACATGCTCCCGCTGC
CGCGGCAACTGGTCGGCGAAGGGCGACTGTTCGCCTTGAAGGTGGTAGGGGACAGCATGATCGAAGCGGCCATCTGTGAC
GGAGACATCGTCATCATCCGGCAGATGGGCTCCGCCGATCACGGCGACATCGTGGCAGCACTCCTGGACGGAGAGGCGAC
GGTGAAGCGCCTACGCCGCGAGGACGGCCGGGTGTGGCTAGTGCCCCACAACCCTGCCTACCAGCCGATCGCAGGCGACG
ACGCAACCATTCTCGGCAAAGTCGTCGCCGTGCTGCGCACCCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-84)

Peptidase S24-like (Peptidase_S24)

(110-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.192

91.228

0.412