Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB03_RS30635 Genome accession   NZ_CP109266
Coordinates   6807630..6808424 (-) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_01643     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6802630..6813424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB03_RS30620 (OHB03_30655) - 6802673..6803551 (+) 879 WP_330246585.1 GNAT family N-acetyltransferase -
  OHB03_RS30625 (OHB03_30660) - 6803612..6805471 (+) 1860 WP_406407217.1 IucA/IucC family protein -
  OHB03_RS30630 (OHB03_30665) - 6805522..6807492 (+) 1971 WP_330246587.1 ATP-dependent DNA helicase -
  OHB03_RS30635 (OHB03_30670) dinR/lexA 6807630..6808424 (-) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OHB03_RS30640 (OHB03_30675) nrdR 6808969..6809481 (+) 513 WP_326606110.1 transcriptional regulator NrdR -
  OHB03_RS30645 (OHB03_30680) - 6809642..6812545 (+) 2904 WP_330246588.1 vitamin B12-dependent ribonucleotide reductase -
  OHB03_RS30650 (OHB03_30685) - 6812884..6813420 (-) 537 WP_406322699.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=672980 OHB03_RS30635 WP_030927140.1 6807630..6808424(-) (dinR/lexA) [Streptomyces sp. NBC_01643]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=672980 OHB03_RS30635 WP_030927140.1 6807630..6808424(-) (dinR/lexA) [Streptomyces sp. NBC_01643]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCGGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGATACCCA
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACATCCTCCGTCGCCCATCAACTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCATCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCACTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTGTTTCCGCTCCCTCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTATGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371