Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA71_RS00340 Genome accession   NZ_CP094806
Coordinates   69102..70451 (-) Length   449 a.a.
NCBI ID   WP_262615210.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain IVB6234     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
SCCmec 69102..90465 69102..70451 within 0


Gene organization within MGE regions


Location: 69102..90465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA71_RS00340 (MUA71_00340) ccrA 69102..70451 (-) 1350 WP_262615210.1 cassette chromosome recombinase CcrA Machinery gene
  MUA71_RS00345 (MUA71_00345) - 70643..70918 (-) 276 WP_262615211.1 hypothetical protein -
  MUA71_RS00350 (MUA71_00350) cch1 70987..72774 (-) 1788 WP_262615212.1 cassette chromosome replicative helicase -
  MUA71_RS00355 (MUA71_00355) - 72774..73043 (-) 270 WP_107373639.1 hypothetical protein -
  MUA71_RS00360 (MUA71_00360) - 73198..74757 (-) 1560 WP_262615213.1 hypothetical protein -
  MUA71_RS00365 (MUA71_00365) - 74965..75561 (+) 597 WP_262615948.1 FRG domain-containing protein -
  MUA71_RS00370 (MUA71_00370) - 75581..75763 (+) 183 WP_253720318.1 hypothetical protein -
  MUA71_RS00375 (MUA71_00375) - 75968..77245 (+) 1278 WP_253720319.1 putative glycoside hydrolase -
  MUA71_RS00380 (MUA71_00380) - 77674..79227 (+) 1554 WP_262615214.1 MFS transporter -
  MUA71_RS00385 (MUA71_00385) - 79344..79883 (+) 540 Protein_72 sortase -
  MUA71_RS00390 (MUA71_00390) - 80234..80395 (+) 162 WP_262615215.1 hypothetical protein -
  MUA71_RS00395 (MUA71_00395) - 80479..81552 (+) 1074 WP_262615216.1 hypothetical protein -
  MUA71_RS00400 (MUA71_00400) - 81553..83691 (+) 2139 WP_262615217.1 hypothetical protein -
  MUA71_RS00405 (MUA71_00405) - 83756..85231 (+) 1476 WP_194440946.1 DUF6038 family protein -
  MUA71_RS00410 (MUA71_00410) - 85460..86560 (+) 1101 WP_262615218.1 hypothetical protein -
  MUA71_RS00415 (MUA71_00415) - 86553..86921 (+) 369 WP_107547097.1 hypothetical protein -
  MUA71_RS00420 (MUA71_00420) - 86921..88564 (+) 1644 WP_262615219.1 DUF5906 domain-containing protein -
  MUA71_RS00425 (MUA71_00425) ccrC 88789..90465 (+) 1677 WP_262615220.1 cassette chromosome recombinase CcrC -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52256.95 Da        Isoelectric Point: 9.9150

>NTDB_id=672937 MUA71_RS00340 WP_262615210.1 69102..70451(-) (ccrA) [Staphylococcus arlettae strain IVB6234]
MKQAMGYLRQSTTKQQSLPAQKQAIKTLAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQTYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKLITTHAPFGYHYH
NGTFTIDTVKAPTVKAVFNYYLQGYGYKKIAQYLEADDKLINRKPYQVRNIILNPNYCGRVINQYEQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNITIRKTDHSLRYYVCPQNMNNARFVCEFKGINAQELETSVLAT
CQDFFQNQQLYSKINHTIQQRLKRQRMHDTSNTLTQEKLIENLAQGKIDVETFREQSQSINLQNKPIQAISDIRIKASLQ
KVIQKSFTLNMLNPYIDEIRITKNKALVGIYFKNEPLNIVNQTSQSSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=672937 MUA71_RS00340 WP_262615210.1 69102..70451(-) (ccrA) [Staphylococcus arlettae strain IVB6234]
ATGAAACAAGCAATGGGTTACTTACGTCAAAGTACAACAAAACAACAATCACTTCCGGCACAGAAACAAGCCATCAAGAC
ATTAGCTGAAAAACACAATATTCAACACATCACATTTTATAGCGATAAGCAATCAGGACGCACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAACGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCTGAACTAGAATCTGATAATATAGGTGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAACTGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACATTCACGATAGACACAGTAAAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATACTTAGAAGCTGATGATAAACTCATTAATCGCAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGAACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATAACTATCCGAAAAACAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGGACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGGAT
GCATGATACTAGTAACACATTAACTCAGGAAAAGCTTATTGAAAATTTAGCACAAGGAAAAATTGATGTAGAAACATTCA
GAGAACAGTCCCAATCAATTAATCTACAGAATAAACCTATACAAGCAATAAGTGATATTCGTATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGAATCCCTATATTGATGAAATTCGCATTACAAAAAACAAAGCCCT
TGTTGGGATCTATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCTCGCAATCATCGATTGTTTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

87.305

100

0.873
  ccrA Staphylococcus aureus N315

72.16

100

0.722