Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SITYG_RS09220 Genome accession   NZ_AP014880
Coordinates   1823066..1824481 (-) Length   471 a.a.
NCBI ID   WP_096363218.1    Uniprot ID   A0AAD1FK22
Organism   Streptococcus intermedius strain TYG1620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1818066..1829481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS09195 (SITYG_18210) - 1818195..1818875 (-) 681 WP_096363217.1 rhomboid family intramembrane serine protease -
  SITYG_RS09200 (SITYG_18220) - 1818868..1819395 (-) 528 WP_009569531.1 5-formyltetrahydrofolate cyclo-ligase -
  SITYG_RS09205 (SITYG_18230) - 1819441..1820571 (-) 1131 WP_009569532.1 N-acetyldiaminopimelate deacetylase -
  SITYG_RS09210 (SITYG_18240) dapD 1820584..1821282 (-) 699 WP_003075982.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  SITYG_RS09215 (SITYG_18250) gltX 1821400..1822857 (-) 1458 WP_096363353.1 glutamate--tRNA ligase -
  SITYG_RS09220 (SITYG_18260) radA 1823066..1824481 (-) 1416 WP_096363218.1 DNA repair protein RadA Machinery gene
  SITYG_RS09225 (SITYG_18270) - 1824439..1824909 (-) 471 WP_096363219.1 cysteine hydrolase family protein -
  SITYG_RS09230 (SITYG_18280) - 1824919..1825362 (-) 444 WP_096363220.1 dUTP diphosphatase -
  SITYG_RS09235 (SITYG_18290) - 1825456..1826490 (-) 1035 WP_096363221.1 S66 peptidase family protein -
  SITYG_RS09240 (SITYG_18300) - 1827554..1828570 (+) 1017 WP_003076007.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 51665.22 Da        Isoelectric Point: 6.3172

>NTDB_id=67288 SITYG_RS09220 WP_096363218.1 1823066..1824481(-) (radA) [Streptococcus intermedius strain TYG1620]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTQPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVLGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVVGVTTVGEVLKKVFDEVNKN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=67288 SITYG_RS09220 WP_096363218.1 1823066..1824481(-) (radA) [Streptococcus intermedius strain TYG1620]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACAGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACTAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGTATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCAGAGCAGATCAAGTTGCGTAGCGAGCGTCTTGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGTGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAGGTA
CAAGCCCTAGTAACACCGACTGTCTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGCCTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAGTTGGTG
TGACAACTGTTGGTGAGGTTTTGAAAAAGGTGTTTGACGAAGTAAATAAAAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

AAA domain (AAA_25)

(77-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.717

95.966

0.851
  radA Streptococcus pneumoniae D39

88.717

95.966

0.851
  radA Streptococcus pneumoniae R6

88.717

95.966

0.851
  radA Streptococcus pneumoniae TIGR4

88.717

95.966

0.851
  radA Streptococcus mitis SK321

88.717

95.966

0.851
  radA Streptococcus mitis NCTC 12261

88.496

95.966

0.849
  radA Bacillus subtilis subsp. subtilis str. 168

61.81

96.178

0.594

Multiple sequence alignment