Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG939_RS32625 Genome accession   NZ_CP109209
Coordinates   7154287..7156470 (+) Length   727 a.a.
NCBI ID   WP_329170380.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01685     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7149287..7161470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG939_RS32605 (OG939_32565) - 7149339..7151003 (+) 1665 WP_241195398.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  OG939_RS32610 (OG939_32570) - 7151118..7152098 (+) 981 WP_329041009.1 phosphotransferase -
  OG939_RS32615 (OG939_32575) - 7152131..7153270 (-) 1140 WP_147982686.1 NAD(P)/FAD-dependent oxidoreductase -
  OG939_RS32620 (OG939_32580) - 7153312..7153995 (-) 684 WP_147982687.1 TetR/AcrR family transcriptional regulator -
  OG939_RS32625 (OG939_32585) recP/tkt 7154287..7156470 (+) 2184 WP_329170380.1 transketolase Machinery gene
  OG939_RS32630 (OG939_32590) - 7156472..7159330 (-) 2859 WP_329170382.1 NHLP bacteriocin export ABC transporter permease/ATPase subunit -

Sequence

Protein


Download         Length: 727 a.a.        Molecular weight: 78496.99 Da        Isoelectric Point: 4.7893

>NTDB_id=672749 OG939_RS32625 WP_329170380.1 7154287..7156470(+) (recP/tkt) [Streptomyces sp. NBC_01685]
MAPERSSSGLTASRDSALARPLAERAGWSDVDLRAVDTVRVLAADAVQKKGNGHPGTAMSLAPLAYLLFQQVMRHDPADD
QWLGRDRFVLSCGHTSLTLYIQLYLAGYGLEMEDLQALRTWGSATPGHPEYRHTRGVEITTGPLGQGMGASVGMAMAGRR
ERGLLDPDAAPGTSPFDHHVYVLASDGDMMEGVSSEAASLAGHQQLGNLITFYDSNQISIEDDTDISFSEDVPARFAAYG
WHVQTVDWTRTGDYVEDVDALLAAIEEAKAERSRPSLIMLRTIIGWPAPTKKNTGKAHGAALGDDEVAGTKRLLGFDPDT
YFPIEDEVLAHTRAVGERGRDARKRWQRAYEDWRAAAPERAALLDRLREQELPDGWTDALPDFPADAKGMATRKASGEVL
TALAPVLPELWGGSADLAGSNNTTMEGEPSFIPADRQTAEFSGGPYGRTLHFGIREHAMGAILNGIALQSLTRPYGGTFL
TFSDYMRPAVRLGALMKLPATYVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLDVVRPGDANETTVCWRTILEHTDRPAG
LVLTRQNLPVLDRADGVHASAEGAARGAYILAEDAGTVPDVILVATGSEVQIALDGRKLLVDEGLSVRVVSMPCREWFAE
QPLSYQDEVLPPDVRARVSVEAAVGQGWREVVGDAGHIVSLEHYGASADYQRLYDEFGITAEAVAAAARASIRDAVEPPV
PGGRRDR

Nucleotide


Download         Length: 2184 bp        

>NTDB_id=672749 OG939_RS32625 WP_329170380.1 7154287..7156470(+) (recP/tkt) [Streptomyces sp. NBC_01685]
ATGGCGCCCGAGCGATCCTCTTCCGGCCTCACGGCATCACGAGACTCCGCCCTCGCCCGGCCCCTGGCCGAGCGGGCGGG
GTGGAGCGACGTGGACCTGCGTGCGGTGGACACCGTGCGGGTACTCGCCGCCGACGCCGTCCAGAAGAAGGGCAACGGCC
ATCCAGGTACGGCGATGAGTCTGGCCCCGCTCGCCTACCTGCTGTTCCAGCAGGTCATGCGGCACGACCCCGCCGACGAC
CAGTGGCTGGGCAGGGACCGCTTCGTCCTCTCGTGCGGCCACACCAGCCTCACCCTGTACATCCAGCTCTACCTCGCCGG
CTACGGCCTGGAGATGGAGGACCTCCAGGCGCTGCGGACCTGGGGATCGGCGACCCCCGGCCACCCCGAGTACCGGCACA
CCCGCGGCGTCGAGATCACCACCGGCCCGCTGGGCCAGGGCATGGGCGCCTCCGTCGGGATGGCGATGGCCGGACGCCGG
GAGCGGGGCCTGCTGGACCCGGACGCCGCGCCGGGCACCAGCCCCTTCGACCACCACGTGTACGTCCTGGCGTCCGACGG
CGACATGATGGAGGGCGTCTCCTCCGAGGCCGCGTCGCTCGCCGGCCACCAGCAGCTCGGCAACCTCATCACCTTCTACG
ACTCCAACCAGATCTCCATCGAGGACGACACCGACATCTCCTTCAGCGAGGATGTCCCCGCCCGCTTCGCCGCGTACGGC
TGGCATGTGCAGACCGTGGACTGGACCCGTACGGGCGACTACGTCGAGGACGTCGACGCCCTGCTCGCCGCGATCGAGGA
GGCGAAGGCGGAGCGGTCCCGGCCCTCGCTGATCATGCTGCGCACGATCATCGGATGGCCCGCCCCGACGAAGAAGAACA
CCGGCAAGGCGCACGGCGCCGCACTGGGGGACGACGAGGTCGCCGGCACCAAGCGGCTCCTCGGGTTCGACCCCGACACG
TACTTCCCCATCGAGGACGAGGTCCTCGCCCACACCCGCGCGGTGGGGGAGCGCGGCAGGGACGCCAGGAAGCGCTGGCA
GCGGGCCTACGAGGACTGGCGGGCCGCCGCCCCGGAGCGGGCCGCCCTGCTGGACCGGCTGCGCGAACAGGAACTGCCGG
ACGGCTGGACCGACGCCCTGCCGGACTTCCCGGCCGACGCCAAGGGCATGGCCACCCGCAAGGCGTCCGGCGAGGTGCTC
ACCGCCCTCGCACCGGTCCTGCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGCAGCAACAACACCACCATGGAGGG
CGAGCCGTCCTTCATCCCCGCCGACCGCCAGACGGCCGAGTTCTCGGGCGGCCCCTACGGGCGCACGCTGCACTTCGGCA
TCCGCGAGCACGCCATGGGCGCCATCCTCAACGGCATCGCGCTGCAGAGCCTCACCCGCCCGTACGGCGGCACGTTCCTC
ACGTTCAGCGACTACATGCGCCCCGCGGTCCGCCTCGGCGCGCTGATGAAGCTCCCCGCCACCTATGTGTGGACCCACGA
CTCCATCGGTCTGGGCGAGGACGGCCCCACCCACCAGCCCGTCGAACACCTGGCCGCCCTGCGGGCGATCCCCGGACTCG
ACGTCGTACGCCCCGGGGACGCCAACGAGACCACCGTCTGCTGGCGGACGATCCTGGAGCACACCGACCGCCCCGCCGGC
CTCGTCCTGACCCGGCAGAACCTCCCGGTGCTCGACCGTGCCGACGGTGTCCACGCCTCCGCCGAGGGAGCCGCGCGCGG
CGCCTACATCCTGGCCGAGGACGCCGGGACCGTCCCCGACGTCATCCTCGTGGCGACCGGGTCGGAGGTGCAGATCGCCC
TCGACGGCCGCAAGCTGCTGGTCGACGAGGGACTGTCCGTACGCGTGGTCTCGATGCCCTGCCGCGAGTGGTTCGCCGAG
CAGCCGCTGTCCTACCAGGACGAGGTGCTGCCCCCGGACGTCCGCGCCCGGGTCAGCGTGGAGGCCGCGGTCGGCCAGGG
CTGGCGCGAGGTCGTCGGCGACGCCGGCCACATCGTCAGCCTGGAGCACTACGGCGCCTCGGCCGACTACCAGCGGCTGT
ACGACGAGTTCGGCATCACCGCCGAGGCCGTCGCCGCGGCGGCCCGCGCCAGCATCCGCGACGCGGTGGAGCCCCCGGTG
CCGGGCGGCAGGCGCGACCGGTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(599-704)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(33-373)

Transketolase, pyrimidine binding domain (Transket_pyr)

(389-569)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.526

94.223

0.42