Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SITYG_RS08040 Genome accession   NZ_AP014880
Coordinates   1577595..1579361 (-) Length   588 a.a.
NCBI ID   WP_003075874.1    Uniprot ID   A0A930WGD4
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1572595..1584361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08025 (SITYG_15820) - 1573801..1575198 (+) 1398 WP_082312142.1 glycoside hydrolase family 1 protein -
  SITYG_RS08030 (SITYG_15840) - 1575347..1575760 (-) 414 WP_096363104.1 cupin domain-containing protein -
  SITYG_RS08035 (SITYG_15850) rcrQ 1575845..1577605 (-) 1761 WP_096363105.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08040 (SITYG_15860) rcrP 1577595..1579361 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08045 (SITYG_15870) - 1579354..1579812 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  SITYG_RS08050 (SITYG_15880) - 1579984..1581171 (-) 1188 WP_096363106.1 NADH-dependent flavin oxidoreductase -
  SITYG_RS08055 (SITYG_15890) - 1581438..1581848 (-) 411 WP_048785532.1 peptide deformylase -
  SITYG_RS08060 (SITYG_15900) scrK 1581914..1582813 (-) 900 WP_048785530.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65380.12 Da        Isoelectric Point: 6.3910

>NTDB_id=67270 SITYG_RS08040 WP_003075874.1 1577595..1579361(-) (rcrP) [Streptococcus intermedius strain TYG1620]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTRGTVISDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSDAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGLRVVRAYNAEDYQDDKFAGANDEVTRLNLFVNRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALSERLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQAKTAKDIKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQAKSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLETNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=67270 SITYG_RS08040 WP_003075874.1 1577595..1579361(-) (rcrP) [Streptococcus intermedius strain TYG1620]
ATGGTTAAATTGTTTAAACGTTTAACTGTTAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTACTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAGAGGAACAGTTATTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTCGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGACATTTTCAATCGTGTACTGGATTATTCAGATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGAAAATCAGAATACTGGCTATGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATCATGACGACAGTTTTGATGACGTTGGCTTTTCCAAAGCAATCTGTTATTCA
ACGATTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGCTTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAAGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAATCGGCTCATGGCGATT
TTAAATCCGATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTATCAGAACGCTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTCGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGGCGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAAGCAAAAACAGCTAAAGATATCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCAGTCATTGAACATGTTAGCTTTACAGCTAAAGCGGGCGAAACGGTGGCCTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGACTTTGGACAAAGCAATGAAAGTCCGTTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAAGCGAAATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTTGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGTTGGCGATTGCACGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATTG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAGGTTGTTGGGCAAGGGACT
CACAAAGAGCTACTAGAGACCAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-291)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.333

100

0.718

Multiple sequence alignment