Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SITYG_RS08035 Genome accession   NZ_AP014880
Coordinates   1575845..1577605 (-) Length   586 a.a.
NCBI ID   WP_096363105.1    Uniprot ID   A0AAD1FJY0
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570845..1582605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS08015 (SITYG_15800) - 1571631..1572356 (-) 726 WP_037582803.1 GntR family transcriptional regulator -
  SITYG_RS08020 (SITYG_15810) celB 1572390..1573658 (-) 1269 WP_009569314.1 PTS cellobiose transporter subunit IIC -
  SITYG_RS08025 (SITYG_15820) - 1573801..1575198 (+) 1398 WP_082312142.1 glycoside hydrolase family 1 protein -
  SITYG_RS08030 (SITYG_15840) - 1575347..1575760 (-) 414 WP_096363104.1 cupin domain-containing protein -
  SITYG_RS08035 (SITYG_15850) rcrQ 1575845..1577605 (-) 1761 WP_096363105.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08040 (SITYG_15860) rcrP 1577595..1579361 (-) 1767 WP_003075874.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS08045 (SITYG_15870) - 1579354..1579812 (-) 459 WP_003074423.1 MarR family winged helix-turn-helix transcriptional regulator -
  SITYG_RS08050 (SITYG_15880) - 1579984..1581171 (-) 1188 WP_096363106.1 NADH-dependent flavin oxidoreductase -
  SITYG_RS08055 (SITYG_15890) - 1581438..1581848 (-) 411 WP_048785532.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65221.46 Da        Isoelectric Point: 6.6736

>NTDB_id=67269 SITYG_RS08035 WP_096363105.1 1575845..1577605(-) (rcrQ) [Streptococcus intermedius strain TYG1620]
MENKKSSLFSQVKPYLKGFQLPLLIAFVGVILSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYVVGAV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTNLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQRLTTLKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HNQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=67269 SITYG_RS08035 WP_096363105.1 1575845..1577605(-) (rcrQ) [Streptococcus intermedius strain TYG1620]
ATGGAAAATAAAAAATCGTCTTTATTTAGCCAAGTGAAACCTTATCTCAAAGGTTTTCAGCTTCCATTGCTCATTGCGTT
TGTGGGAGTAATACTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCTATCTCTAATATTGCTCTTTTCTTAGCAGTTTTATATGTGGTGGGTGCTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCGCTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGCGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAATCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACTACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAACCGGAAATGGAAAATGATGAGCACAAGTCTCAACGGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGGAAAACGACCATTGTCAACTTGCTCATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTTCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTAACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACAATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.649

99.317

0.712

Multiple sequence alignment