Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG939_RS10430 Genome accession   NZ_CP109209
Coordinates   2354485..2355471 (-) Length   328 a.a.
NCBI ID   WP_319353692.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01685     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2349485..2360471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG939_RS10420 (OG939_10385) - 2351111..2352988 (-) 1878 WP_124274850.1 discoidin domain-containing protein -
  OG939_RS10425 (OG939_10390) - 2353019..2354431 (-) 1413 WP_124274849.1 GH1 family beta-glucosidase -
  OG939_RS10430 (OG939_10395) amiE 2354485..2355471 (-) 987 WP_319353692.1 ABC transporter ATP-binding protein Regulator
  OG939_RS10435 (OG939_10400) - 2355468..2356526 (-) 1059 WP_241195110.1 ABC transporter permease -
  OG939_RS10440 (OG939_10405) - 2356532..2357512 (-) 981 WP_147983935.1 ABC transporter permease -
  OG939_RS10445 (OG939_10410) - 2357509..2358564 (-) 1056 WP_124274846.1 ABC transporter ATP-binding protein -
  OG939_RS10450 (OG939_10415) - 2358583..2360262 (-) 1680 WP_147983934.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35714.98 Da        Isoelectric Point: 6.6636

>NTDB_id=672690 OG939_RS10430 WP_319353692.1 2354485..2355471(-) (amiE) [Streptomyces sp. NBC_01685]
MTAEPILTISGLNVDYGTGTSGVRALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGDVHYHRPGGES
VDILSLSPDELRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLTAHRPGMRAAERTARAEELLNLVGISADRLTAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRKLVELRERLSFSVVFITHDISLLIEFSDRIAIMYGGRIV
EQAGAAEIYRDPRHPYSEGLLHSFPALHGPRRELTGIPGSPPHLSAMPAGCAFHPRCGKAFEPCSQRVPVLAAPDAGQDR
EVACWLHH

Nucleotide


Download         Length: 987 bp        

>NTDB_id=672690 OG939_RS10430 WP_319353692.1 2354485..2355471(-) (amiE) [Streptomyces sp. NBC_01685]
ATGACCGCCGAGCCGATCCTCACCATCAGCGGCCTGAACGTCGACTACGGCACCGGCACGAGCGGCGTCCGCGCACTGCG
CGACATCGACCTCACCCTGCACCGCGGCGAAGTCCTCGGCCTCGCGGGGGAGTCCGGGTCGGGCAAGTCCACGCTGGCGT
ACGCCGTCACCCGGCTGCTCTCCCCGCCGGGGGTGATCACCGGCGGCGACGTCCATTACCACCGGCCGGGCGGCGAGAGC
GTCGACATCCTCTCCCTCAGCCCGGACGAGCTGCGCGCCTTCCGCTGGCAGGAGCTGTCGATCGTGTTCCAGGGGGCGAT
GAACTCGCTCAACCCGGTGCACACCGTCCACAGCCAGCTCACCGACGTGCTCACCGCACACCGCCCCGGCATGCGGGCCG
CCGAGCGCACCGCCCGCGCCGAGGAGCTGCTCAACCTCGTCGGCATCTCCGCCGACCGGCTCACCGCCTACCCGCACCAG
CTCTCCGGCGGCATGCGCCAGCGCGTGATGATCGCGATGGCGCTCGCCCTGGAACCCGAGATCGTCATCATGGACGAGCC
CACCACCGCGCTCGACGTCGTCATGCAGCGGCAGATCCTGCGCAAGCTGGTGGAACTGCGCGAACGCCTCTCGTTCTCGG
TCGTGTTCATCACCCACGACATCTCGCTGCTGATCGAGTTCTCCGACCGCATCGCGATCATGTACGGCGGCCGGATCGTG
GAGCAGGCGGGAGCCGCCGAGATCTACCGCGACCCCCGCCACCCCTACAGCGAGGGGCTGCTGCACTCCTTCCCCGCGCT
GCACGGCCCCCGCCGGGAGCTCACCGGCATCCCCGGCTCGCCCCCGCACCTGTCCGCCATGCCCGCCGGCTGCGCCTTCC
ACCCCCGCTGCGGCAAGGCCTTCGAGCCGTGCTCCCAGCGGGTCCCGGTCCTCGCCGCGCCGGACGCCGGCCAGGACCGC
GAGGTCGCCTGCTGGCTGCACCACTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)

ABC transporter (ABC_tran)

(26-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

38.65

99.39

0.384
  amiE Streptococcus thermophilus LMD-9

38.65

99.39

0.384
  amiE Streptococcus salivarius strain HSISS4

38.65

99.39

0.384
  oppD Streptococcus mutans UA159

37.082

100

0.372