Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA93_RS07920 Genome accession   NZ_CP094793
Coordinates   1635598..1636044 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6165     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630598..1641044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA93_RS07890 (MUA93_07880) gcvPA 1631525..1632871 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA93_RS07895 (MUA93_07885) gcvT 1632891..1633982 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA93_RS07900 (MUA93_07890) - 1634140..1634664 (-) 525 WP_001015120.1 shikimate kinase -
  MUA93_RS07905 (MUA93_07895) - 1634654..1634800 (-) 147 WP_001789879.1 hypothetical protein -
  MUA93_RS07910 (MUA93_07900) comGF 1634897..1635394 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA93_RS07915 (MUA93_07905) comGE 1635312..1635611 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA93_RS07920 (MUA93_07910) comGD 1635598..1636044 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA93_RS07925 (MUA93_07915) comGC 1636022..1636333 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA93_RS07930 (MUA93_07920) comGB 1636347..1637417 (-) 1071 Protein_1558 competence type IV pilus assembly protein ComGB -
  MUA93_RS07935 (MUA93_07925) comGA 1637389..1638363 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA93_RS07940 (MUA93_07930) - 1638415..1639038 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA93_RS07945 (MUA93_07935) - 1639035..1639364 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA93_RS07950 (MUA93_07940) - 1639364..1640350 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA93_RS07955 (MUA93_07945) - 1640347..1640550 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=672678 MUA93_RS07920 WP_072357807.1 1635598..1636044(-) (comGD) [Staphylococcus aureus strain IVB6165]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=672678 MUA93_RS07920 WP_072357807.1 1635598..1636044(-) (comGD) [Staphylococcus aureus strain IVB6165]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986