Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA09_RS08815 Genome accession   NZ_CP094789
Coordinates   1752652..1753098 (-) Length   148 a.a.
NCBI ID   WP_001791207.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6167     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747652..1758098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA09_RS08785 (MUA09_08765) gcvPA 1748578..1749924 (-) 1347 WP_045179189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA09_RS08790 (MUA09_08770) gcvT 1749944..1751035 (-) 1092 WP_045179191.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA09_RS08795 (MUA09_08775) - 1751194..1751718 (-) 525 WP_001015125.1 shikimate kinase -
  MUA09_RS08800 (MUA09_08780) - 1751708..1751854 (-) 147 WP_001789879.1 hypothetical protein -
  MUA09_RS08805 (MUA09_08785) comGF 1751951..1752448 (-) 498 WP_001794328.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA09_RS08810 (MUA09_08790) comGE 1752366..1752665 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA09_RS08815 (MUA09_08795) comGD 1752652..1753098 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA09_RS08820 (MUA09_08800) comGC 1753076..1753387 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA09_RS08825 (MUA09_08805) comGB 1753401..1754471 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA09_RS08830 (MUA09_08810) comGA 1754443..1755417 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA09_RS08835 (MUA09_08815) - 1755469..1756092 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA09_RS08840 (MUA09_08820) - 1756089..1756418 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA09_RS08845 (MUA09_08825) - 1756418..1757404 (-) 987 WP_000161314.1 ROK family glucokinase -
  MUA09_RS08850 (MUA09_08830) - 1757401..1757604 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17113.28 Da        Isoelectric Point: 10.3312

>NTDB_id=672591 MUA09_RS08815 WP_001791207.1 1752652..1753098(-) (comGD) [Staphylococcus aureus strain IVB6167]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTLTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=672591 MUA09_RS08815 WP_001791207.1 1752652..1753098(-) (comGD) [Staphylococcus aureus strain IVB6167]
ATGGAGAAGCAGTTGCAAATTAGAAAACAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACATTGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAACTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986