Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA09_RS00190 Genome accession   NZ_CP094789
Coordinates   41650..42999 (-) Length   449 a.a.
NCBI ID   WP_250396288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6167     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36650..47999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA09_RS00160 (MUA09_00160) - 36722..37615 (-) 894 WP_252559344.1 YafY family protein -
  MUA09_RS00165 (MUA09_00165) - 37785..38231 (-) 447 WP_252559346.1 RadC family protein -
  MUA09_RS00170 (MUA09_00170) - 38259..38765 (-) 507 WP_252559348.1 DUF1643 domain-containing protein -
  MUA09_RS00175 (MUA09_00175) - 38781..39092 (-) 312 WP_252559354.1 DUF960 family protein -
  MUA09_RS00180 (MUA09_00180) - 39188..39526 (-) 339 WP_252559359.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA09_RS00185 (MUA09_00185) ccrB 40000..41628 (-) 1629 WP_252559361.1 cassette chromosome recombinase CcrB Machinery gene
  MUA09_RS00190 (MUA09_00190) ccrA 41650..42999 (-) 1350 WP_250396288.1 cassette chromosome recombinase CcrA Machinery gene
  MUA09_RS00195 (MUA09_00195) cch1 43178..44962 (-) 1785 WP_252559364.1 cassette chromosome replicative helicase -
  MUA09_RS00200 (MUA09_00200) ssb 44962..45255 (-) 294 WP_107638748.1 cassette chromosome ssDNA-binding protein -
  MUA09_RS00205 (MUA09_00205) - 45428..46939 (-) 1512 WP_250396290.1 hypothetical protein -
  MUA09_RS00210 (MUA09_00210) - 47001..47360 (-) 360 WP_252592295.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52296.31 Da        Isoelectric Point: 9.9969

>NTDB_id=672571 MUA09_RS00190 WP_250396288.1 41650..42999(-) (ccrA) [Staphylococcus aureus strain IVB6167]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLEEDTKLINRKPYQVRAIIMNPNYCGRVINQYGQYDNMVPSIVSISI
YEQAQAIRAQKHTKRTPSSNQLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNASRFICDFKGINAENLEKQVLES
CQKFFRDQQLYSKIKHAIEKQLKKQRMHDTSNTLTHEKLIEKLAQGTIDVETFREQSQSISLQHKPIQPISDIRIKASLQ
KVIQKSFTLKMLYPYIDEIHITKNKELSGIYLKDEPLNIVNQTIQLSTG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=672571 MUA09_RS00190 WP_250396288.1 41650..42999(-) (ccrA) [Staphylococcus aureus strain IVB6167]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACAGGTT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGTTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTAAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACTTAGAAGAAGATACTAAGCTAATCAACCGAAAACCCTATCAAGTACGCGCTATTATCATGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAATATGGTTCCATCTATTGTTTCGATCAGTATA
TACGAACAAGCTCAAGCAATACGGGCACAAAAACATACCAAACGGACTCCATCATCTAATCAACTCAAACAAAAAATCAA
ATGTCCGTGTTGTGGCTCAACACTCACAAATATGACAATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCACGTTTCATATGTGACTTTAAAGGAATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAATCC
TGCCAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACATGCTATTGAGAAACAGCTCAAAAAACAAAGGAT
GCATGATACTAGTAACACATTAACTCATGAAAAGCTCATTGAAAAATTAGCACAAGGAACAATTGATGTAGAAACATTCA
GAGAACAATCTCAATCAATAAGCCTGCAGCATAAACCTATACAACCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAAAATGCTGTATCCATATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATCGTTAATCAAACGATACAATTATCAACTGGCTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.629

99.555

0.773
  ccrA Staphylococcus aureus N315

71.938

100

0.719