Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG893_RS16125 Genome accession   NZ_CP109200
Coordinates   3548476..3549888 (+) Length   470 a.a.
NCBI ID   WP_099173611.1    Uniprot ID   A0ABU8A364
Organism   Streptomyces sp. NBC_01696     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3543476..3554888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG893_RS16105 (OG893_16090) - 3543653..3544477 (-) 825 WP_147983524.1 sugar phosphate isomerase/epimerase -
  OG893_RS16110 (OG893_16095) - 3544582..3545529 (-) 948 WP_124277575.1 Ppx/GppA phosphatase family protein -
  OG893_RS16115 (OG893_16100) - 3545562..3546404 (+) 843 WP_099173613.1 hypothetical protein -
  OG893_RS16120 (OG893_16105) - 3546511..3548340 (-) 1830 WP_329206144.1 hypothetical protein -
  OG893_RS16125 (OG893_16110) radA/sms 3548476..3549888 (+) 1413 WP_099173611.1 DNA repair protein RadA Machinery gene
  OG893_RS16130 (OG893_16115) disA 3549969..3551093 (+) 1125 WP_099173610.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG893_RS16135 (OG893_16120) - 3551212..3552036 (-) 825 WP_329208333.1 hypothetical protein -
  OG893_RS16140 (OG893_16125) - 3552296..3553198 (+) 903 WP_099173608.1 A/G-specific adenine glycosylase -
  OG893_RS16145 (OG893_16130) - 3553382..3553966 (+) 585 WP_147983522.1 SigE family RNA polymerase sigma factor -
  OG893_RS16150 (OG893_16135) - 3553954..3554652 (+) 699 WP_329043468.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49545.65 Da        Isoelectric Point: 8.2515

>NTDB_id=672548 OG893_RS16125 WP_099173611.1 3548476..3549888(+) (radA/sms) [Streptomyces sp. NBC_01696]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAAVPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRMRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFKHALVPRDPGQVPAGMKVTEVADMGDALRVLPRRSRPDGPQEDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=672548 OG893_RS16125 WP_099173611.1 3548476..3549888(+) (radA/sms) [Streptomyces sp. NBC_01696]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGCCCGTCCTACCGATGCACCGAATGCGGCTGGACGACGGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGAGCCCCTGCGGTCCGTACGACGGCGGCGG
GGCGGGTCTCCACCGCCGCCGTGCCGATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGCTCCACCGGGGTCGGCGAG
CTGGACCGCGTGCTCGGCGGAGGGCTCGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTGGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCCGCGAGCGACGACCATCGGACGCTGTACGTCACGGCCGAGGAGTCCGCCAGCC
AGGTGCGGATGCGGGCCGACCGGATCCGGGCGATCAACGACCACCTCTATCTGGCGGCCGAGACCGACCTCTCCGCCGTG
CTGGGGCACCTGGACGCGGTCAAGCCGTCCCTCCTCGTCCTCGACTCCGTGCAGACCGTCGCCTCACCGGAGATCGAGGG
CGCGCCCGGCGGCATGGCGCAGGTCCGCGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTGGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGGCTCCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGCGCCACGGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCGGACCCCTCGGGGCTCTTCCTCACCCGCCGTGACGAGCCCGTTC
CCGGCACCTGTCTGACGGTCACACTGGAGGGCAAGCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGG
CCGGATCAGCGCCCTCGGCAAGCGGGACATCTACAGCGCCACGGTGGGCGGCGTGAAGCTCACCGAGCCGGCCGCGGACC
TCGCCATCGCCCTGGCCCTGGCCAGCGCGGCCAGCGACACACCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGG
CTCGCCGGGGAGGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCGGAGGCGTACCGTCTCGGGTTCAAGCACGCCCT
GGTCCCGAGGGACCCGGGACAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCGACATGGGCGACGCCCTGAGAGTCC
TTCCCCGCCGCTCTCGGCCGGACGGACCACAGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

41.943

96.383

0.404
  radA Streptococcus pneumoniae D39

41.943

96.383

0.404
  radA Streptococcus pneumoniae R6

41.943

96.383

0.404
  radA Streptococcus pneumoniae TIGR4

41.943

96.383

0.404
  radA Streptococcus mitis SK321

43.357

91.277

0.396
  radA Streptococcus mitis NCTC 12261

43.357

91.277

0.396