Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG963_RS30250 Genome accession   NZ_CP109190
Coordinates   6758287..6760020 (-) Length   577 a.a.
NCBI ID   WP_030925847.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01707     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6753287..6765020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG963_RS30240 (OG963_30255) - 6755218..6756345 (+) 1128 WP_030925843.1 RNA polymerase sigma factor -
  OG963_RS30245 (OG963_30260) rcrQ 6756362..6758287 (-) 1926 WP_093774474.1 ABC transporter ATP-binding protein Regulator
  OG963_RS30250 (OG963_30265) rcrP 6758287..6760020 (-) 1734 WP_030925847.1 ABC transporter ATP-binding protein Regulator
  OG963_RS30255 (OG963_30270) - 6760191..6761636 (-) 1446 WP_093774476.1 FGGY family carbohydrate kinase -
  OG963_RS30260 (OG963_30275) - 6761697..6762002 (-) 306 WP_030925852.1 hypothetical protein -
  OG963_RS30280 (OG963_30295) - 6763374..6763574 (+) 201 WP_143019994.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62827.83 Da        Isoelectric Point: 5.3847

>NTDB_id=672496 OG963_RS30250 WP_030925847.1 6758287..6760020(-) (rcrP) [Streptomyces sp. NBC_01707]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILQYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEAVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPSLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672496 OG963_RS30250 WP_030925847.1 6758287..6760020(-) (rcrP) [Streptomyces sp. NBC_01707]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCGGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGCAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTGCGGGCGTCGGTCTTCGACCGCGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCACCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGATTCCGCGGTGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGCCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGGCGGTGCGGGAGCTGCGCGCTCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTGCCGCGGCTCTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGTCGCTGCTGGCGAGGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTACAACGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
CGCCGCGCTGCGCCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.271

100

0.412