Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG963_RS30245 Genome accession   NZ_CP109190
Coordinates   6756362..6758287 (-) Length   641 a.a.
NCBI ID   WP_093774474.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01707     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6751362..6763287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG963_RS30230 (OG963_30245) - 6751690..6752949 (+) 1260 WP_030925839.1 NAD(P)/FAD-dependent oxidoreductase -
  OG963_RS30235 (OG963_30250) dnaG 6753088..6754992 (+) 1905 WP_093774472.1 DNA primase -
  OG963_RS30240 (OG963_30255) - 6755218..6756345 (+) 1128 WP_030925843.1 RNA polymerase sigma factor -
  OG963_RS30245 (OG963_30260) rcrQ 6756362..6758287 (-) 1926 WP_093774474.1 ABC transporter ATP-binding protein Regulator
  OG963_RS30250 (OG963_30265) rcrP 6758287..6760020 (-) 1734 WP_030925847.1 ABC transporter ATP-binding protein Regulator
  OG963_RS30255 (OG963_30270) - 6760191..6761636 (-) 1446 WP_093774476.1 FGGY family carbohydrate kinase -
  OG963_RS30260 (OG963_30275) - 6761697..6762002 (-) 306 WP_030925852.1 hypothetical protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69081.57 Da        Isoelectric Point: 5.5760

>NTDB_id=672495 OG963_RS30245 WP_093774474.1 6756362..6758287(-) (rcrQ) [Streptomyces sp. NBC_01707]
MAGPGGRMMAGGAPTDRSMNFKGSSKRLLKRFATEKASLYAMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRLPAGT
TKEQAVEGLRKTNSALADLLSGVDFTPGQGIDFDAVGHVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRAGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=672495 OG963_RS30245 WP_093774474.1 6756362..6758287(-) (rcrQ) [Streptomyces sp. NBC_01707]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGAACTTCAAGGGGTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAAGCCTCGCTGTACGCGATGCTGGCGGCCTGTGTGTTGAGCGTCGGTCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCCGGCGTCATCGGCCGGCGGCTACCCGCGGGTACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGCCTTGGCCGACCTGCTCTCCGGAGTCGACTTCACCCC
GGGCCAGGGCATCGACTTCGATGCGGTGGGCCACGTACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGTGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTCGCGCTGGTCACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCACAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGACTGCGGGTCGCGTCGGGCGCGTTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACACAGGTCGCTTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGATCCGGTGACAGGTGAGCGCCCGGCCGATCTGCTCGGCAGTGTCTCTCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAGCGTCGAACCGGGCCACACCGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTCGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGATGAGCTGCGGGCAGGAATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCTCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTCTCGGACCCCGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCACAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.75

82.371

0.36